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This page was generated on 2025-11-18 11:39 -0500 (Tue, 18 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4826
lconwaymacOS 12.7.6 Montereyx86_64R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" 4561
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4562
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 911/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
graper 1.27.0  (landing page)
Britta Velten
Snapshot Date: 2025-11-17 13:40 -0500 (Mon, 17 Nov 2025)
git_url: https://git.bioconductor.org/packages/graper
git_branch: devel
git_last_commit: 95474d7
git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for graper on lconway

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: graper
Version: 1.27.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.27.0.tar.gz
StartedAt: 2025-11-18 02:18:13 -0500 (Tue, 18 Nov 2025)
EndedAt: 2025-11-18 02:35:47 -0500 (Tue, 18 Nov 2025)
EllapsedTime: 1054.6 seconds
RetCode: 0
Status:   OK  
CheckDir: graper.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2025-10-21 r88958)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library’
* installing *source* package ‘graper’ ...
** this is package ‘graper’ version ‘1.27.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fit_graper.cpp -o fit_graper.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-861.525
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-578.13
ELB improved by 283.395

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-520.25
ELB improved by 57.8794

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-478.157
ELB improved by 42.0934

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.812
ELB improved by 20.3452

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.215
ELB improved by 8.59639

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.304
ELB improved by 4.9117

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.391
ELB improved by 3.91276

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.624
ELB improved by 3.76653

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.689
ELB improved by 3.93543

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.445
ELB improved by 4.24361

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.924
ELB improved by 4.5216

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.425
ELB improved by 4.49877

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.43
ELB improved by 3.99511

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.259
ELB improved by 3.17112

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.974
ELB improved by 2.28499

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.475
ELB improved by 1.49849

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.538
ELB improved by 0.937569

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.933
ELB improved by 0.60421

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.515
ELB improved by 0.418786

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.201
ELB improved by 0.313191

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.953
ELB improved by 0.248654

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.747
ELB improved by 0.205539

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.573
ELB improved by 0.174105

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.424
ELB improved by 0.149463

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.295
ELB improved by 0.129105

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.183
ELB improved by 0.111758

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.086
ELB improved by 0.0968363

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.002
ELB improved by 0.0841084

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.928
ELB improved by 0.073444

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.864
ELB improved by 0.0646622

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.806
ELB improved by 0.0575019

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.755
ELB improved by 0.0516653

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.708
ELB improved by 0.0468713

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.665
ELB improved by 0.0428855

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.625
ELB improved by 0.0395268

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.589
ELB improved by 0.0366607

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.554
ELB improved by 0.034188

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.522
ELB improved by 0.0320351

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.492
ELB improved by 0.0301464

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.464
ELB improved by 0.0284788

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.437
ELB improved by 0.0269984

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.411
ELB improved by 0.0256773

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.387
ELB improved by 0.0244931

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.363
ELB improved by 0.0234268

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.341
ELB improved by 0.0224626

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.319
ELB improved by 0.021587

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.298
ELB improved by 0.0207885

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.278
ELB improved by 0.0200574

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.259
ELB improved by 0.0193854

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.24
ELB improved by 0.0187651

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.222
ELB improved by 0.0181904

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.204
ELB improved by 0.017656

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.187
ELB improved by 0.0171573

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.17
ELB improved by 0.0166904

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.154
ELB improved by 0.016252

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.138
ELB improved by 0.0158392

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.123
ELB improved by 0.0154496

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.108
ELB improved by 0.015081

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.093
ELB improved by 0.0147319

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.079
ELB improved by 0.0144006

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.065
ELB improved by 0.0140861

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.051
ELB improved by 0.0137872

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.037
ELB improved by 0.0135032

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.024
ELB improved by 0.0132333

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.011
ELB improved by 0.012977

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.998
ELB improved by 0.0127339

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.986
ELB improved by 0.0125036

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.974
ELB improved by 0.0122857

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.962
ELB improved by 0.0120802

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.95
ELB improved by 0.0118868

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.938
ELB improved by 0.0117054

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.926
ELB improved by 0.0115358

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.915
ELB improved by 0.0113782

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.904
ELB improved by 0.0112323

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.893
ELB improved by 0.0110983

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.882
ELB improved by 0.010976

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.871
ELB improved by 0.0108657

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.86
ELB improved by 0.0107672

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.849
ELB improved by 0.0106807

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.839
ELB improved by 0.0106064

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.828
ELB improved by 0.0105442

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.818
ELB improved by 0.0104945

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.807
ELB improved by 0.0104573

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.797
ELB improved by 0.010433

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.786
ELB improved by 0.0104217

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.776
ELB improved by 0.0104238

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.766
ELB improved by 0.0104397

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.755
ELB improved by 0.0104698

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.745
ELB improved by 0.0105145

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.734
ELB improved by 0.0105744

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.723
ELB improved by 0.0106502

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.713
ELB improved by 0.0107425

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.702
ELB improved by 0.0108523

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.691
ELB improved by 0.0109803

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.68
ELB improved by 0.0111278

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.668
ELB improved by 0.0112958

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.657
ELB improved by 0.0114857

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.645
ELB improved by 0.011699

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.633
ELB improved by 0.0119375

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.621
ELB improved by 0.0122031

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.609
ELB improved by 0.0124981

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.596
ELB improved by 0.0128248

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.583
ELB improved by 0.0131863

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.569
ELB improved by 0.0135856

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.555
ELB improved by 0.0140266

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.54
ELB improved by 0.0145135

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.525
ELB improved by 0.0150511

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.51
ELB improved by 0.015645

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.493
ELB improved by 0.0163018

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.476
ELB improved by 0.0170291

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.459
ELB improved by 0.0178358

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.44
ELB improved by 0.0187324

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.42
ELB improved by 0.0197316

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.399
ELB improved by 0.0208484

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.377
ELB improved by 0.0221015

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.354
ELB improved by 0.0235137

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.328
ELB improved by 0.0251138

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.302
ELB improved by 0.0269386

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.273
ELB improved by 0.0290364

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.241
ELB improved by 0.0314713

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.207
ELB improved by 0.0343318

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.169
ELB improved by 0.0377423

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.127
ELB improved by 0.0418839

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.08
ELB improved by 0.0470281

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.026
ELB improved by 0.0535948

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.964
ELB improved by 0.0622508

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.89
ELB improved by 0.0740765

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.799
ELB improved by 0.0908247

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.684
ELB improved by 0.115248

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.533
ELB improved by 0.151259

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.33
ELB improved by 0.20327

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.055
ELB improved by 0.27417

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.692
ELB improved by 0.363366

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.228
ELB improved by 0.463822

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.682
ELB improved by 0.545777

iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.124
ELB improved by 0.558009

iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.623
ELB improved by 0.501199

iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.198
ELB improved by 0.425088

iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.843
ELB improved by 0.354798

iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.55
ELB improved by 0.292811

iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.312
ELB improved by 0.238448

iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.12
ELB improved by 0.191711

iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.968
ELB improved by 0.152568

iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.847
ELB improved by 0.120542

iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.752
ELB improved by 0.0947939

iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.678
ELB improved by 0.0743406

iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.62
ELB improved by 0.0582194

iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.574
ELB improved by 0.0455785

iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.539
ELB improved by 0.0357038

iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.511
ELB improved by 0.028014

iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.489
ELB improved by 0.0220426

iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.471
ELB improved by 0.017418

iteration 154
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.457
ELB improved by 0.013845

iteration 155
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.446
ELB improved by 0.0110903

iteration 156
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.437
ELB improved by 0.00897013

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-853.695
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-595.546
ELB improved by 258.15

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-534.56
ELB improved by 60.9858

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.862
ELB improved by 48.6983

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.13
ELB improved by 26.7316

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.726
ELB improved by 10.404

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.984
ELB improved by 4.74168

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.623
ELB improved by 3.36097

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.648
ELB improved by 2.97563

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.712
ELB improved by 2.93534

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.64
ELB improved by 3.07277

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.334
ELB improved by 3.30544

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.792
ELB improved by 3.5426

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.155
ELB improved by 3.63657

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.727
ELB improved by 3.4279

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.822
ELB improved by 2.90513

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.577
ELB improved by 2.24522

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.943
ELB improved by 1.63416

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.798
ELB improved by 1.14441

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.012
ELB improved by 0.786535

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.458
ELB improved by 0.553511

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.043
ELB improved by 0.415307

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.707
ELB improved by 0.335637

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.419
ELB improved by 0.288548

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.159
ELB improved by 0.25926

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.92
ELB improved by 0.239923

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.693
ELB improved by 0.226315

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.477
ELB improved by 0.216039

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.27
ELB improved by 0.207634

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.069
ELB improved by 0.200139

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.876
ELB improved by 0.192894

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.691
ELB improved by 0.185446

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.514
ELB improved by 0.177514

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.345
ELB improved by 0.16897

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.185
ELB improved by 0.159829

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.035
ELB improved by 0.150216

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.894
ELB improved by 0.14033

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.764
ELB improved by 0.130405

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.643
ELB improved by 0.120669

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.532
ELB improved by 0.111318

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.429
ELB improved by 0.102504

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.335
ELB improved by 0.0943249

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.248
ELB improved by 0.0868356

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.168
ELB improved by 0.0800509

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.094
ELB improved by 0.0739578

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.026
ELB improved by 0.0685243

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.962
ELB improved by 0.0637079

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.902
ELB improved by 0.0594621

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.847
ELB improved by 0.0557415

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.794
ELB improved by 0.0525045

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.744
ELB improved by 0.0497157

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.697
ELB improved by 0.0473464

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.652
ELB improved by 0.0453739

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.608
ELB improved by 0.0437788

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.565
ELB improved by 0.0425392

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.524
ELB improved by 0.0416206

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.483
ELB improved by 0.0409611

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.442
ELB improved by 0.0404553

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.402
ELB improved by 0.0399453

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.363
ELB improved by 0.0392351

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.325
ELB improved by 0.0381413

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.288
ELB improved by 0.0365671

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.254
ELB improved by 0.0345548

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.222
ELB improved by 0.032271

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.192
ELB improved by 0.0299304

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.164
ELB improved by 0.0277109

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.138
ELB improved by 0.0257129

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.114
ELB improved by 0.0239649

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.092
ELB improved by 0.0224514

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.071
ELB improved by 0.0211401

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.051
ELB improved by 0.0199968

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.032
ELB improved by 0.018993

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.014
ELB improved by 0.0181062

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.996
ELB improved by 0.0173197

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.98
ELB improved by 0.016621

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.964
ELB improved by 0.0160005

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.948
ELB improved by 0.0154509

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.933
ELB improved by 0.0149666

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.919
ELB improved by 0.0145433

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.905
ELB improved by 0.0141781

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.891
ELB improved by 0.0138692

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.877
ELB improved by 0.0136157

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.864
ELB improved by 0.0134187

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.85
ELB improved by 0.0132804

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.837
ELB improved by 0.0132058

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.824
ELB improved by 0.0132026

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.811
ELB improved by 0.0132831

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.797
ELB improved by 0.0134662

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.783
ELB improved by 0.0137807

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.769
ELB improved by 0.0142717

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.754
ELB improved by 0.0150098

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.738
ELB improved by 0.0161086

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.72
ELB improved by 0.0177535

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.7
ELB improved by 0.0202513

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.676
ELB improved by 0.0241066

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.646
ELB improved by 0.0301179

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.606
ELB improved by 0.0394047

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.553
ELB improved by 0.0530495

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.483
ELB improved by 0.0707582

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.394
ELB improved by 0.0887765

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.293
ELB improved by 0.10066

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.189
ELB improved by 0.103781

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.086
ELB improved by 0.103072

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.98
ELB improved by 0.106112

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.86
ELB improved by 0.119903

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.706
ELB improved by 0.154456

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.477
ELB improved by 0.228896

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.098
ELB improved by 0.379296

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.425
ELB improved by 0.672178

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.42
ELB improved by 1.00561

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.512
ELB improved by 0.907675

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.93
ELB improved by 0.581896

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.589
ELB improved by 0.341061

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.392
ELB improved by 0.197161

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.276
ELB improved by 0.115884

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.205
ELB improved by 0.0713354

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.157
ELB improved by 0.0474245

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.123
ELB improved by 0.034895

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.094
ELB improved by 0.02869

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.068
ELB improved by 0.0261249

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.042
ELB improved by 0.0257523

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.015
ELB improved by 0.0266888

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.987
ELB improved by 0.028231

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.957
ELB improved by 0.0296851

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.927
ELB improved by 0.0303973

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.897
ELB improved by 0.0299313

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.869
ELB improved by 0.0282361

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.843
ELB improved by 0.0256321

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.821
ELB improved by 0.0226088

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.801
ELB improved by 0.0195975

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.784
ELB improved by 0.0168603

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.77
ELB improved by 0.0145016

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.757
ELB improved by 0.0125314

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.746
ELB improved by 0.0109206

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.737
ELB improved by 0.00962988

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-891.575
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-570.624
ELB improved by 320.951

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-512.507
ELB improved by 58.1169

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.473
ELB improved by 31.0344

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.708
ELB improved by 11.7642

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.603
ELB improved by 6.10559

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.469
ELB improved by 5.13385

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.037
ELB improved by 5.43209

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.023
ELB improved by 6.01397

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.895
ELB improved by 6.12785

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.644
ELB improved by 5.25112

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.754
ELB improved by 3.88953

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.845
ELB improved by 2.90924

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.596
ELB improved by 2.24876

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.002
ELB improved by 1.59431

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.949
ELB improved by 1.05284

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.242
ELB improved by 0.706828

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.737
ELB improved by 0.505208

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.354
ELB improved by 0.383524

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.05
ELB improved by 0.30412

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.801
ELB improved by 0.248638

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.593
ELB improved by 0.208133

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.415
ELB improved by 0.177779

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.26
ELB improved by 0.154598

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.124
ELB improved by 0.136562

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.002
ELB improved by 0.122248

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.891
ELB improved by 0.110658

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.79
ELB improved by 0.10109

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.697
ELB improved by 0.0930541

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.611
ELB improved by 0.0861981

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.53
ELB improved by 0.0802668

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.455
ELB improved by 0.0750701

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.385
ELB improved by 0.0704633

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.318
ELB improved by 0.0663343

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.256
ELB improved by 0.0625952

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.197
ELB improved by 0.0591767

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.141
ELB improved by 0.0560236

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.088
ELB improved by 0.0530919

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.037
ELB improved by 0.0503471

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.989
ELB improved by 0.0477617

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.944
ELB improved by 0.0453145

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.901
ELB improved by 0.0429892

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.86
ELB improved by 0.0407732

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.822
ELB improved by 0.0386573

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.785
ELB improved by 0.0366348

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.75
ELB improved by 0.0347007

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.718
ELB improved by 0.0328515

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.686
ELB improved by 0.0310846

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.657
ELB improved by 0.0293982

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.629
ELB improved by 0.0277907

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.603
ELB improved by 0.0262607

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.578
ELB improved by 0.0248068

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.555
ELB improved by 0.0234275

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.533
ELB improved by 0.0221211

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.512
ELB improved by 0.0208857

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.492
ELB improved by 0.0197191

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.473
ELB improved by 0.0186191

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.456
ELB improved by 0.0175832

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.439
ELB improved by 0.0166087

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.424
ELB improved by 0.0156928

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.409
ELB improved by 0.0148328

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.395
ELB improved by 0.0140257

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.381
ELB improved by 0.0132688

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.369
ELB improved by 0.0125591

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.357
ELB improved by 0.011894

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.346
ELB improved by 0.0112708

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.335
ELB improved by 0.0106869

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.325
ELB improved by 0.0101397

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.315
ELB improved by 0.00962694

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-891.216
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-568.005
ELB improved by 323.21

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-508.813
ELB improved by 59.1927

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-476.584
ELB improved by 32.2286

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.494
ELB improved by 13.0903

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.418
ELB improved by 6.07596

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.886
ELB improved by 4.53231

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.618
ELB improved by 4.26745

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.102
ELB improved by 4.516

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.102
ELB improved by 5.00027

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.706
ELB improved by 5.39617

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.468
ELB improved by 5.23809

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.121
ELB improved by 4.34624

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.969
ELB improved by 3.1524

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.767
ELB improved by 2.20212

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.122
ELB improved by 1.64487

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.799
ELB improved by 1.32336

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.73
ELB improved by 1.06894

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.867
ELB improved by 0.86264

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.148
ELB improved by 0.718937

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.535
ELB improved by 0.612613

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.001
ELB improved by 0.533928

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.521
ELB improved by 0.480888

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.075
ELB improved by 0.445799

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.654
ELB improved by 0.421006

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.252
ELB improved by 0.402095

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.865
ELB improved by 0.387173

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.489
ELB improved by 0.375716

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.121
ELB improved by 0.367887

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.757
ELB improved by 0.364208

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.391
ELB improved by 0.365462

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.019
ELB improved by 0.372732

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.631
ELB improved by 0.387602

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.218
ELB improved by 0.412625

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.766
ELB improved by 0.452315

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.251
ELB improved by 0.515281

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.632
ELB improved by 0.618352

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.842
ELB improved by 0.790599

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.783
ELB improved by 1.0589

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.393
ELB improved by 1.38983

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.778
ELB improved by 1.61488

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.253
ELB improved by 1.52524

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398
ELB improved by 1.25321

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.035
ELB improved by 0.964899

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.329
ELB improved by 0.706052

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.829
ELB improved by 0.4993

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.478
ELB improved by 0.351113

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.225
ELB improved by 0.253503

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.031
ELB improved by 0.193652

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.871
ELB improved by 0.160304

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.725
ELB improved by 0.14553

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.581
ELB improved by 0.144337

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.427
ELB improved by 0.153918

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.254
ELB improved by 0.172901

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.055
ELB improved by 0.199218

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.83
ELB improved by 0.225074

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.597
ELB improved by 0.233056

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.39
ELB improved by 0.207272

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.232
ELB improved by 0.15767

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.121
ELB improved by 0.110985

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.042
ELB improved by 0.0785601

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.985
ELB improved by 0.0575043

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.941
ELB improved by 0.0434498

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.908
ELB improved by 0.0337185

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.881
ELB improved by 0.0267779

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.859
ELB improved by 0.0217022

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.841
ELB improved by 0.0179077

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.826
ELB improved by 0.0150153

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.814
ELB improved by 0.0127731

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.802
ELB improved by 0.0110093

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.793
ELB improved by 0.00960371

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  3.714   0.537   7.467

Example timings

graper.Rcheck/graper-Ex.timings

nameusersystemelapsed
coef.graper0.0570.0240.186
getPIPs0.0550.0160.099
graper0.1060.0240.224
makeExampleData0.0100.0010.052
makeExampleDataWithUnequalGroups0.0150.0020.027
plotELBO0.4570.0360.663
plotGroupPenalties1.3570.0652.419
plotPosterior0.9230.0601.458
predict.graper2.0460.1162.809
print.graper0.0520.0150.076