Britta Velten
| Snapshot Date: 2025-11-14 13:40 -0500 (Fri, 14 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: devel |
| git_last_commit: 95474d7 |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-11-15 11:35 -0500 (Sat, 15 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4826 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4561 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 911/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.27.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.27.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.27.0.tar.gz |
| StartedAt: 2025-11-14 20:16:15 -0500 (Fri, 14 Nov 2025) |
| EndedAt: 2025-11-14 20:16:47 -0500 (Fri, 14 Nov 2025) |
| EllapsedTime: 32.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2025-11-04 r88984)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.27.0’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fit_graper.cpp -o fit_graper.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-922.171
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-569.363
ELB improved by 352.807
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-508.884
ELB improved by 60.4797
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-473.901
ELB improved by 34.9832
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.498
ELB improved by 14.4021
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.805
ELB improved by 6.6939
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.278
ELB improved by 4.52677
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.455
ELB improved by 3.82293
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.778
ELB improved by 3.67637
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.984
ELB improved by 3.794
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.947
ELB improved by 4.03742
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.721
ELB improved by 4.22643
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.652
ELB improved by 4.06905
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.247
ELB improved by 3.40412
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.783
ELB improved by 2.46448
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.15
ELB improved by 1.63328
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.082
ELB improved by 1.06782
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.36
ELB improved by 0.721477
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.847
ELB improved by 0.513804
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.459
ELB improved by 0.387765
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.15
ELB improved by 0.308364
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.895
ELB improved by 0.255813
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.675
ELB improved by 0.219424
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.482
ELB improved by 0.193357
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.308
ELB improved by 0.174276
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.147
ELB improved by 0.160175
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.998
ELB improved by 0.149795
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.855
ELB improved by 0.142316
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.718
ELB improved by 0.137187
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.584
ELB improved by 0.134023
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.452
ELB improved by 0.132546
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.319
ELB improved by 0.132545
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.185
ELB improved by 0.133854
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.049
ELB improved by 0.136333
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.909
ELB improved by 0.139866
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.765
ELB improved by 0.14436
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.615
ELB improved by 0.149751
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.459
ELB improved by 0.156018
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.296
ELB improved by 0.163197
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.124
ELB improved by 0.171396
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.943
ELB improved by 0.180803
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.752
ELB improved by 0.191678
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.547
ELB improved by 0.204327
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.328
ELB improved by 0.219044
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.092
ELB improved by 0.236055
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.837
ELB improved by 0.255506
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.559
ELB improved by 0.277546
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.257
ELB improved by 0.302508
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.926
ELB improved by 0.331062
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.561
ELB improved by 0.364321
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.157
ELB improved by 0.404094
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.703
ELB improved by 0.453914
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.181
ELB improved by 0.522357
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.549
ELB improved by 0.632178
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.715
ELB improved by 0.834194
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.57
ELB improved by 1.14505
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.233
ELB improved by 1.3362
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.956
ELB improved by 1.27703
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.805
ELB improved by 1.15124
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.742
ELB improved by 1.06332
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.759
ELB improved by 0.982879
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.911
ELB improved by 0.848215
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.241
ELB improved by 0.669861
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.757
ELB improved by 0.483991
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.422
ELB improved by 0.335318
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.184
ELB improved by 0.237469
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.006
ELB improved by 0.178029
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.863
ELB improved by 0.143344
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.738
ELB improved by 0.124829
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.62
ELB improved by 0.117843
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.5
ELB improved by 0.120291
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.37
ELB improved by 0.130164
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.231
ELB improved by 0.139024
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.101
ELB improved by 0.129182
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.006
ELB improved by 0.0952687
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.948
ELB improved by 0.0577273
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.915
ELB improved by 0.0330075
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.895
ELB improved by 0.0205071
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.88
ELB improved by 0.0146971
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.868
ELB improved by 0.011872
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.858
ELB improved by 0.0103047
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.849
ELB improved by 0.00928531
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-817.083
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-551.535
ELB improved by 265.548
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-489.318
ELB improved by 62.2167
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.002
ELB improved by 41.3158
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.794
ELB improved by 17.2083
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.039
ELB improved by 6.75489
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.528
ELB improved by 3.51138
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.056
ELB improved by 2.47126
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.006
ELB improved by 2.05037
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.136
ELB improved by 1.86973
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.339
ELB improved by 1.797
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.569
ELB improved by 1.77033
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.807
ELB improved by 1.76215
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.046
ELB improved by 1.7609
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.287
ELB improved by 1.75931
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.541
ELB improved by 1.74618
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.838
ELB improved by 1.70284
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.23
ELB improved by 1.60771
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.781
ELB improved by 1.44893
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.545
ELB improved by 1.23572
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.549
ELB improved by 0.996712
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.783
ELB improved by 0.76611
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.213
ELB improved by 0.569812
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.794
ELB improved by 0.41914
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.481
ELB improved by 0.31248
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.24
ELB improved by 0.240838
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.047
ELB improved by 0.193175
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.887
ELB improved by 0.159771
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.753
ELB improved by 0.133963
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.641
ELB improved by 0.112583
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.546
ELB improved by 0.0948972
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.465
ELB improved by 0.0808561
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.395
ELB improved by 0.0700788
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.333
ELB improved by 0.0618541
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.278
ELB improved by 0.0554614
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.227
ELB improved by 0.0503494
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.181
ELB improved by 0.0461489
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.138
ELB improved by 0.0426243
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.099
ELB improved by 0.0396234
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.062
ELB improved by 0.0370446
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.027
ELB improved by 0.0348163
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.994
ELB improved by 0.0328857
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.963
ELB improved by 0.0312125
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.933
ELB improved by 0.0297649
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.905
ELB improved by 0.0285176
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.877
ELB improved by 0.0274498
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.851
ELB improved by 0.0265446
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.825
ELB improved by 0.0257879
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.8
ELB improved by 0.0251685
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.775
ELB improved by 0.024677
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.751
ELB improved by 0.0243061
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.727
ELB improved by 0.02405
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.703
ELB improved by 0.0239046
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.679
ELB improved by 0.0238672
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.655
ELB improved by 0.0239363
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.631
ELB improved by 0.024112
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.606
ELB improved by 0.0243955
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.582
ELB improved by 0.0247896
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.556
ELB improved by 0.0252984
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.53
ELB improved by 0.0259276
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.504
ELB improved by 0.0266848
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.476
ELB improved by 0.0275794
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.448
ELB improved by 0.0286231
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.418
ELB improved by 0.0298302
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.386
ELB improved by 0.0312178
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.354
ELB improved by 0.0328067
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.319
ELB improved by 0.0346218
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.282
ELB improved by 0.0366932
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.243
ELB improved by 0.0390569
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.202
ELB improved by 0.0417566
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.157
ELB improved by 0.044845
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.108
ELB improved by 0.0483868
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.056
ELB improved by 0.052461
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.999
ELB improved by 0.0571654
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.936
ELB improved by 0.0626221
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.867
ELB improved by 0.0689848
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.791
ELB improved by 0.0764491
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.705
ELB improved by 0.0852666
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.61
ELB improved by 0.0957648
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.501
ELB improved by 0.108375
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.378
ELB improved by 0.12367
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.235
ELB improved by 0.14242
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.069
ELB improved by 0.165667
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.875
ELB improved by 0.194817
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.643
ELB improved by 0.231735
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.364
ELB improved by 0.278753
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.026
ELB improved by 0.338311
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.614
ELB improved by 0.41165
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.118
ELB improved by 0.496014
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.536
ELB improved by 0.582136
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.879
ELB improved by 0.657506
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.164
ELB improved by 0.714201
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.417
ELB improved by 0.746973
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.673
ELB improved by 0.744773
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.978
ELB improved by 0.694332
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.384
ELB improved by 0.594261
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.917
ELB improved by 0.467135
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.57
ELB improved by 0.346996
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.315
ELB improved by 0.255034
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.119
ELB improved by 0.196012
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.952
ELB improved by 0.166786
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.792
ELB improved by 0.160331
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.629
ELB improved by 0.16236
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.476
ELB improved by 0.152886
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.351
ELB improved by 0.125173
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.259
ELB improved by 0.0923082
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.192
ELB improved by 0.0666416
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.142
ELB improved by 0.0503424
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.101
ELB improved by 0.041074
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.064
ELB improved by 0.0364303
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.03
ELB improved by 0.0348352
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.994
ELB improved by 0.0352443
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.958
ELB improved by 0.0366724
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.92
ELB improved by 0.0378411
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.883
ELB improved by 0.037269
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.849
ELB improved by 0.0340439
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.82
ELB improved by 0.0286509
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.797
ELB improved by 0.0226766
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.78
ELB improved by 0.0175641
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.766
ELB improved by 0.013858
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.754
ELB improved by 0.0113953
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.745
ELB improved by 0.00978482
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-875.529
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-574.035
ELB improved by 301.494
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-509.734
ELB improved by 64.3016
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.853
ELB improved by 40.881
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.297
ELB improved by 17.5553
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.178
ELB improved by 7.11973
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.943
ELB improved by 4.2345
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.5
ELB improved by 3.44321
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.342
ELB improved by 3.15816
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.322
ELB improved by 3.0201
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.41
ELB improved by 2.9119
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.622
ELB improved by 2.78789
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422
ELB improved by 2.62231
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.598
ELB improved by 2.40138
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.47
ELB improved by 2.12853
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.644
ELB improved by 1.82609
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.12
ELB improved by 1.52404
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.878
ELB improved by 1.24203
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.892
ELB improved by 0.985925
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.127
ELB improved by 0.765047
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.533
ELB improved by 0.593233
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.061
ELB improved by 0.471902
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.671
ELB improved by 0.390603
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.334
ELB improved by 0.336982
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.032
ELB improved by 0.301825
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.753
ELB improved by 0.279489
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.486
ELB improved by 0.266865
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.223
ELB improved by 0.262403
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.958
ELB improved by 0.265556
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.681
ELB improved by 0.276551
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.385
ELB improved by 0.296366
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.058
ELB improved by 0.326763
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.688
ELB improved by 0.370218
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.258
ELB improved by 0.429431
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.752
ELB improved by 0.506446
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.149
ELB improved by 0.602808
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.427
ELB improved by 0.722291
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.554
ELB improved by 0.872539
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.495
ELB improved by 1.05888
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.225
ELB improved by 1.27016
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.759
ELB improved by 1.46677
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.169
ELB improved by 1.58937
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.586
ELB improved by 1.58347
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.157
ELB improved by 1.42888
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.982
ELB improved by 1.17434
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.075
ELB improved by 0.907742
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.387
ELB improved by 0.687938
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.856
ELB improved by 0.53099
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.426
ELB improved by 0.429925
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.058
ELB improved by 0.367509
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.741
ELB improved by 0.317145
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.484
ELB improved by 0.257162
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.291
ELB improved by 0.192674
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.152
ELB improved by 0.139823
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.048
ELB improved by 0.103565
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.968
ELB improved by 0.0804125
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.902
ELB improved by 0.0656619
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.846
ELB improved by 0.0560179
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.796
ELB improved by 0.0496087
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.751
ELB improved by 0.0453374
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.709
ELB improved by 0.0423947
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.668
ELB improved by 0.0400551
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.631
ELB improved by 0.0376699
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.596
ELB improved by 0.0347833
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.565
ELB improved by 0.0312709
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.537
ELB improved by 0.0273578
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.514
ELB improved by 0.0234534
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.494
ELB improved by 0.0199217
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.477
ELB improved by 0.01695
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.463
ELB improved by 0.0145561
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.45
ELB improved by 0.0126626
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.439
ELB improved by 0.0111638
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.429
ELB improved by 0.0099627
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-888.684
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-568.827
ELB improved by 319.857
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-510.953
ELB improved by 57.8737
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-478.023
ELB improved by 32.9304
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.15
ELB improved by 14.8732
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.711
ELB improved by 7.43857
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.689
ELB improved by 6.02229
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.644
ELB improved by 6.04497
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.565
ELB improved by 6.0786
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.101
ELB improved by 5.46365
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.88
ELB improved by 4.22106
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.972
ELB improved by 2.9083
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.056
ELB improved by 1.9164
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.769
ELB improved by 1.28674
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.835
ELB improved by 0.933801
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.084
ELB improved by 0.75168
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.428
ELB improved by 0.65548
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.838
ELB improved by 0.590062
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.306
ELB improved by 0.532304
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.822
ELB improved by 0.483317
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.375
ELB improved by 0.447399
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.952
ELB improved by 0.422724
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.547
ELB improved by 0.404905
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.157
ELB improved by 0.390672
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.778
ELB improved by 0.378635
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.409
ELB improved by 0.368983
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.046
ELB improved by 0.363302
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.681
ELB improved by 0.365019
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.299
ELB improved by 0.381296
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.871
ELB improved by 0.42834
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.33
ELB improved by 0.540876
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.577
ELB improved by 0.752995
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.598
ELB improved by 0.979428
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.462
ELB improved by 1.13597
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.21
ELB improved by 1.25151
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.037
ELB improved by 1.17296
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.058
ELB improved by 0.979684
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.256
ELB improved by 0.801321
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.604
ELB improved by 0.65251
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.073
ELB improved by 0.531027
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.638
ELB improved by 0.43434
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.281
ELB improved by 0.357745
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.985
ELB improved by 0.2961
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.739
ELB improved by 0.245678
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.535
ELB improved by 0.20412
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.365
ELB improved by 0.169658
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.224
ELB improved by 0.140821
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.108
ELB improved by 0.11654
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.012
ELB improved by 0.0961536
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.932
ELB improved by 0.0792371
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.867
ELB improved by 0.0654181
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.813
ELB improved by 0.0542895
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.767
ELB improved by 0.045414
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.729
ELB improved by 0.0383644
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.696
ELB improved by 0.032759
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.668
ELB improved by 0.0282781
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.643
ELB improved by 0.0246658
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.621
ELB improved by 0.0217236
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.602
ELB improved by 0.0192997
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.585
ELB improved by 0.0172797
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.569
ELB improved by 0.0155771
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.555
ELB improved by 0.0141271
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.542
ELB improved by 0.0128803
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.531
ELB improved by 0.0117993
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.52
ELB improved by 0.0108549
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.51
ELB improved by 0.0100246
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.5
ELB improved by 0.00929049
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
1.068 0.110 1.212
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.014 | 0.007 | 0.021 | |
| getPIPs | 0.013 | 0.008 | 0.020 | |
| graper | 0.026 | 0.013 | 0.039 | |
| makeExampleData | 0.002 | 0.002 | 0.004 | |
| makeExampleDataWithUnequalGroups | 0.002 | 0.001 | 0.003 | |
| plotELBO | 0.126 | 0.010 | 0.138 | |
| plotGroupPenalties | 0.451 | 0.014 | 0.472 | |
| plotPosterior | 0.213 | 0.010 | 0.234 | |
| predict.graper | 0.223 | 0.053 | 0.301 | |
| print.graper | 0.012 | 0.006 | 0.021 | |