Britta Velten
| Snapshot Date: 2026-03-02 13:40 -0500 (Mon, 02 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: devel |
| git_last_commit: 95474d7 |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-03 11:35 -0500 (Tue, 03 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4877 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4570 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 926/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.27.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| See other builds for graper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.27.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.27.0.tar.gz |
| StartedAt: 2026-03-02 20:11:44 -0500 (Mon, 02 Mar 2026) |
| EndedAt: 2026-03-02 20:12:16 -0500 (Mon, 02 Mar 2026) |
| EllapsedTime: 31.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.27.0’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fit_graper.cpp -o fit_graper.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-830.23
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-571.414
ELB improved by 258.817
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-507.26
ELB improved by 64.1534
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.677
ELB improved by 44.5829
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.706
ELB improved by 19.9718
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.463
ELB improved by 8.24249
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.294
ELB improved by 4.16925
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.662
ELB improved by 2.63193
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.632
ELB improved by 2.03017
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.841
ELB improved by 1.7903
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.123
ELB improved by 1.7189
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.388
ELB improved by 1.73466
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.587
ELB improved by 1.80066
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.693
ELB improved by 1.89401
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.708
ELB improved by 1.98485
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.687
ELB improved by 2.02162
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.751
ELB improved by 1.93598
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.061
ELB improved by 1.69013
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.725
ELB improved by 1.3354
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.744
ELB improved by 0.980892
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.042
ELB improved by 0.702394
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.531
ELB improved by 0.511372
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.147
ELB improved by 0.383704
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.853
ELB improved by 0.293479
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.627
ELB improved by 0.226412
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.45
ELB improved by 0.176792
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.309
ELB improved by 0.141346
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.192
ELB improved by 0.116728
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.092
ELB improved by 0.0996836
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.005
ELB improved by 0.0876266
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.926
ELB improved by 0.0787858
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.854
ELB improved by 0.0720432
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.787
ELB improved by 0.0667155
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.725
ELB improved by 0.0623846
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.666
ELB improved by 0.0587883
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.61
ELB improved by 0.0557559
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.557
ELB improved by 0.0531714
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.506
ELB improved by 0.0509525
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.457
ELB improved by 0.0490382
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.41
ELB improved by 0.0473823
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.364
ELB improved by 0.0459486
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.319
ELB improved by 0.0447084
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.275
ELB improved by 0.0436387
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.233
ELB improved by 0.0427214
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.191
ELB improved by 0.0419418
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.15
ELB improved by 0.041289
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.109
ELB improved by 0.0407545
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.068
ELB improved by 0.0403329
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.028
ELB improved by 0.0400209
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.989
ELB improved by 0.0398176
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.949
ELB improved by 0.0397246
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.909
ELB improved by 0.0397457
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.869
ELB improved by 0.0398873
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.829
ELB improved by 0.0401586
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.789
ELB improved by 0.0405718
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.747
ELB improved by 0.0411428
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.705
ELB improved by 0.0418917
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.663
ELB improved by 0.042844
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.619
ELB improved by 0.044032
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.573
ELB improved by 0.0454962
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.526
ELB improved by 0.0472884
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.476
ELB improved by 0.0494746
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.424
ELB improved by 0.0521404
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.369
ELB improved by 0.0553972
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.309
ELB improved by 0.0593917
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.245
ELB improved by 0.0643181
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.175
ELB improved by 0.0704352
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.097
ELB improved by 0.0780867
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.009
ELB improved by 0.0877252
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.909
ELB improved by 0.0999307
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.794
ELB improved by 0.115409
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.659
ELB improved by 0.134943
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.499
ELB improved by 0.159258
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.31
ELB improved by 0.188823
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.087
ELB improved by 0.223707
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.823
ELB improved by 0.263727
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.514
ELB improved by 0.308967
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.154
ELB improved by 0.360337
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.734
ELB improved by 0.419695
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.245
ELB improved by 0.489459
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.672
ELB improved by 0.572133
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.002
ELB improved by 0.670761
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.213
ELB improved by 0.788318
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.305
ELB improved by 0.908631
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.323
ELB improved by 0.981819
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.314
ELB improved by 1.00849
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.3
ELB improved by 1.01403
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.33
ELB improved by 0.970435
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.438
ELB improved by 0.892139
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.607
ELB improved by 0.830637
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.821
ELB improved by 0.786613
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.149
ELB improved by 0.671506
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.665
ELB improved by 0.484144
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.345
ELB improved by 0.319747
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.138
ELB improved by 0.206739
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.003
ELB improved by 0.135017
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.912
ELB improved by 0.091144
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.848
ELB improved by 0.0641856
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.801
ELB improved by 0.0470158
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.766
ELB improved by 0.0355718
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.738
ELB improved by 0.0276257
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.716
ELB improved by 0.0219281
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.698
ELB improved by 0.0177422
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.684
ELB improved by 0.0146084
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.671
ELB improved by 0.0122261
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.661
ELB improved by 0.0103909
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.652
ELB improved by 0.00895998
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-919.887
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-575.453
ELB improved by 344.434
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-521.691
ELB improved by 53.7621
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-494.765
ELB improved by 26.9265
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.786
ELB improved by 12.9785
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.621
ELB improved by 7.16527
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.941
ELB improved by 5.67987
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.057
ELB improved by 5.88443
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.57
ELB improved by 6.48684
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.734
ELB improved by 6.83641
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.215
ELB improved by 6.5183
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.585
ELB improved by 5.63013
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.158
ELB improved by 4.42711
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.974
ELB improved by 3.18403
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.788
ELB improved by 2.18577
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.293
ELB improved by 1.49518
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.244
ELB improved by 1.04927
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.476
ELB improved by 0.767835
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.888
ELB improved by 0.588413
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.418
ELB improved by 0.469827
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.031
ELB improved by 0.386764
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.706
ELB improved by 0.324426
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.431
ELB improved by 0.275434
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.194
ELB improved by 0.237532
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.983
ELB improved by 0.210682
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.788
ELB improved by 0.194449
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.602
ELB improved by 0.186533
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.42
ELB improved by 0.182074
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.245
ELB improved by 0.174982
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.082
ELB improved by 0.16245
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.935
ELB improved by 0.147208
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.802
ELB improved by 0.133486
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.679
ELB improved by 0.123103
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.563
ELB improved by 0.115689
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.453
ELB improved by 0.110249
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.347
ELB improved by 0.105958
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.244
ELB improved by 0.10229
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.145
ELB improved by 0.0989438
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.05
ELB improved by 0.0957555
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.957
ELB improved by 0.0926407
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.867
ELB improved by 0.0895616
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.781
ELB improved by 0.0865088
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.697
ELB improved by 0.0834902
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.617
ELB improved by 0.0805247
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.539
ELB improved by 0.077637
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.464
ELB improved by 0.0748539
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.392
ELB improved by 0.0722024
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.323
ELB improved by 0.0697073
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.255
ELB improved by 0.0673906
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.19
ELB improved by 0.0652712
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.127
ELB improved by 0.0633642
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.065
ELB improved by 0.0616819
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.005
ELB improved by 0.0602337
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.946
ELB improved by 0.059027
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.888
ELB improved by 0.0580674
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.83
ELB improved by 0.0573594
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.773
ELB improved by 0.0569067
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.717
ELB improved by 0.0567122
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.66
ELB improved by 0.0567789
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.603
ELB improved by 0.057109
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.545
ELB improved by 0.0577047
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.486
ELB improved by 0.0585673
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.427
ELB improved by 0.0596972
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.366
ELB improved by 0.0610931
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.303
ELB improved by 0.062752
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.238
ELB improved by 0.0646683
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.171
ELB improved by 0.0668327
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.102
ELB improved by 0.0692326
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.03
ELB improved by 0.0718502
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.956
ELB improved by 0.0746631
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.878
ELB improved by 0.0776428
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.797
ELB improved by 0.0807549
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.713
ELB improved by 0.0839575
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.626
ELB improved by 0.0872011
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.536
ELB improved by 0.0904266
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.442
ELB improved by 0.0935645
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.345
ELB improved by 0.0965336
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.246
ELB improved by 0.0992417
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.145
ELB improved by 0.101589
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.041
ELB improved by 0.103474
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.936
ELB improved by 0.10481
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.831
ELB improved by 0.105534
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.725
ELB improved by 0.105635
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.62
ELB improved by 0.10516
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.516
ELB improved by 0.104232
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.413
ELB improved by 0.103044
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.311
ELB improved by 0.101847
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.21
ELB improved by 0.100938
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.109
ELB improved by 0.100631
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.008
ELB improved by 0.101229
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.905
ELB improved by 0.102956
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.799
ELB improved by 0.105769
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.69
ELB improved by 0.108939
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.58
ELB improved by 0.110526
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.472
ELB improved by 0.107622
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.374
ELB improved by 0.0984301
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.289
ELB improved by 0.0846121
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.219
ELB improved by 0.0703158
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.16
ELB improved by 0.0588933
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.109
ELB improved by 0.0514419
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.061
ELB improved by 0.047606
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.014
ELB improved by 0.0466399
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.967
ELB improved by 0.0478073
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.916
ELB improved by 0.0502763
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.863
ELB improved by 0.0529216
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.809
ELB improved by 0.0544698
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.755
ELB improved by 0.0541383
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.703
ELB improved by 0.0521627
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.653
ELB improved by 0.0493931
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.607
ELB improved by 0.0462811
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.565
ELB improved by 0.0423984
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.528
ELB improved by 0.0369886
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.498
ELB improved by 0.0300154
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.475
ELB improved by 0.0225629
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.459
ELB improved by 0.0160488
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.448
ELB improved by 0.0112267
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.44
ELB improved by 0.0080286
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-852.788
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-578.152
ELB improved by 274.637
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-517.204
ELB improved by 60.9476
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.575
ELB improved by 42.6288
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.281
ELB improved by 21.2947
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.885
ELB improved by 9.39534
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.485
ELB improved by 5.40065
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.723
ELB improved by 4.7621
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.53
ELB improved by 5.19287
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.41
ELB improved by 6.11955
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.266
ELB improved by 7.14452
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.828
ELB improved by 7.43714
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.598
ELB improved by 6.23068
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.447
ELB improved by 4.15063
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.013
ELB improved by 2.43414
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.579
ELB improved by 1.43397
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.658
ELB improved by 0.921147
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.995
ELB improved by 0.663179
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.463
ELB improved by 0.531874
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.998
ELB improved by 0.464951
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.565
ELB improved by 0.432531
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.145
ELB improved by 0.420218
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.724
ELB improved by 0.421463
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.289
ELB improved by 0.434392
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.829
ELB improved by 0.460393
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.328
ELB improved by 0.501006
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.779
ELB improved by 0.548878
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.195
ELB improved by 0.584434
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.594
ELB improved by 0.600358
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.984
ELB improved by 0.609967
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.361
ELB improved by 0.623121
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.719
ELB improved by 0.642596
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.047
ELB improved by 0.67146
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.332
ELB improved by 0.714838
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.557
ELB improved by 0.77494
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.722
ELB improved by 0.835385
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.861
ELB improved by 0.860744
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.018
ELB improved by 0.843027
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.217
ELB improved by 0.801437
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.474
ELB improved by 0.74289
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.806
ELB improved by 0.667727
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.225
ELB improved by 0.580842
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.735
ELB improved by 0.489836
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.334
ELB improved by 0.401364
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.014
ELB improved by 0.320179
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.764
ELB improved by 0.249429
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.574
ELB improved by 0.190683
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.43
ELB improved by 0.143911
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.322
ELB improved by 0.107926
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.241
ELB improved by 0.0809929
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.18
ELB improved by 0.0612894
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.132
ELB improved by 0.0471575
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.095
ELB improved by 0.0372215
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.065
ELB improved by 0.0304275
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.039
ELB improved by 0.0260446
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.015
ELB improved by 0.0236628
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.992
ELB improved by 0.0232292
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.967
ELB improved by 0.0251818
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.936
ELB improved by 0.0307766
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.893
ELB improved by 0.0426931
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.828
ELB improved by 0.0654332
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.726
ELB improved by 0.102115
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.585
ELB improved by 0.140777
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.437
ELB improved by 0.148367
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.32
ELB improved by 0.116925
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.241
ELB improved by 0.0782718
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.191
ELB improved by 0.0507881
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.157
ELB improved by 0.0334457
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.135
ELB improved by 0.0225039
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.119
ELB improved by 0.0156294
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.108
ELB improved by 0.0113764
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.099
ELB improved by 0.00876771
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-851.434
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-559.388
ELB improved by 292.045
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-502.5
ELB improved by 56.8881
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.95
ELB improved by 33.5502
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.438
ELB improved by 14.5116
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.375
ELB improved by 6.06359
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.027
ELB improved by 3.34796
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.412
ELB improved by 2.61533
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.051
ELB improved by 2.36096
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.83
ELB improved by 2.22089
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.724
ELB improved by 2.106
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.745
ELB improved by 1.9783
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.933
ELB improved by 1.81197
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.341
ELB improved by 1.59244
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.014
ELB improved by 1.32673
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.968
ELB improved by 1.04605
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.178
ELB improved by 0.79014
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.593
ELB improved by 0.58543
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.156
ELB improved by 0.436906
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.821
ELB improved by 0.3352
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.554
ELB improved by 0.266932
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.333
ELB improved by 0.220643
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.145
ELB improved by 0.188309
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.98
ELB improved by 0.164832
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.833
ELB improved by 0.147103
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.7
ELB improved by 0.13324
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.577
ELB improved by 0.122086
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.465
ELB improved by 0.112912
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.359
ELB improved by 0.105241
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.261
ELB improved by 0.0987474
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.167
ELB improved by 0.0931982
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.079
ELB improved by 0.0884222
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.995
ELB improved by 0.0842874
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.914
ELB improved by 0.0806899
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.836
ELB improved by 0.0775453
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.762
ELB improved by 0.0747845
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.689
ELB improved by 0.0723497
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.619
ELB improved by 0.0701926
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.551
ELB improved by 0.0682725
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.484
ELB improved by 0.0665552
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.419
ELB improved by 0.0650121
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.356
ELB improved by 0.0636195
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.293
ELB improved by 0.0623581
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.232
ELB improved by 0.0612126
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.172
ELB improved by 0.0601709
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.113
ELB improved by 0.0592242
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.054
ELB improved by 0.0583664
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.997
ELB improved by 0.0575935
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.94
ELB improved by 0.056904
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.883
ELB improved by 0.0562977
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.828
ELB improved by 0.0557762
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.772
ELB improved by 0.055342
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.717
ELB improved by 0.0549988
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.663
ELB improved by 0.0547508
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.608
ELB improved by 0.0546029
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.553
ELB improved by 0.0545605
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.499
ELB improved by 0.0546294
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.444
ELB improved by 0.0548153
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.389
ELB improved by 0.0551247
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.333
ELB improved by 0.0555637
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.277
ELB improved by 0.0561392
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.22
ELB improved by 0.0568581
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.163
ELB improved by 0.0577274
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.104
ELB improved by 0.0587551
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.044
ELB improved by 0.0599494
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.983
ELB improved by 0.0613195
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.92
ELB improved by 0.0628759
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.855
ELB improved by 0.0646301
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.788
ELB improved by 0.0665958
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.72
ELB improved by 0.0687881
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.648
ELB improved by 0.0712244
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.575
ELB improved by 0.073923
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.498
ELB improved by 0.0769019
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.417
ELB improved by 0.080176
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.334
ELB improved by 0.0837512
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.246
ELB improved by 0.087617
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.154
ELB improved by 0.0917351
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.058
ELB improved by 0.0960274
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.958
ELB improved by 0.100365
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.853
ELB improved by 0.104568
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.745
ELB improved by 0.108412
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.633
ELB improved by 0.111661
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.519
ELB improved by 0.114106
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.404
ELB improved by 0.115601
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.288
ELB improved by 0.116096
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.172
ELB improved by 0.115646
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.057
ELB improved by 0.114426
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.945
ELB improved by 0.112764
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.833
ELB improved by 0.11118
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.723
ELB improved by 0.110424
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.612
ELB improved by 0.1115
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.496
ELB improved by 0.115669
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.371
ELB improved by 0.124505
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.231
ELB improved by 0.140117
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.066
ELB improved by 0.165709
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.859
ELB improved by 0.206353
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.591
ELB improved by 0.268259
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.239
ELB improved by 0.352339
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.797
ELB improved by 0.441942
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.295
ELB improved by 0.502061
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.796
ELB improved by 0.498368
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.377
ELB improved by 0.419597
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.075
ELB improved by 0.301309
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.879
ELB improved by 0.196796
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.752
ELB improved by 0.126506
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.668
ELB improved by 0.0842389
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.608
ELB improved by 0.0593424
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.564
ELB improved by 0.0443409
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.529
ELB improved by 0.0349273
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.5
ELB improved by 0.0287541
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.476
ELB improved by 0.0245496
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.454
ELB improved by 0.0216133
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.435
ELB improved by 0.0195519
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.417
ELB improved by 0.0181432
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.399
ELB improved by 0.0172677
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.382
ELB improved by 0.0168748
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.365
ELB improved by 0.0169654
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.348
ELB improved by 0.0175802
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.329
ELB improved by 0.018784
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.308
ELB improved by 0.0206281
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.285
ELB improved by 0.0230696
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.26
ELB improved by 0.0258356
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.231
ELB improved by 0.0282903
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.202
ELB improved by 0.029489
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.173
ELB improved by 0.0286144
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.148
ELB improved by 0.025593
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.126
ELB improved by 0.0212425
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.11
ELB improved by 0.0167094
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.097
ELB improved by 0.0128084
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.087
ELB improved by 0.00982692
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
1.075 0.091 1.211
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.012 | 0.006 | 0.018 | |
| getPIPs | 0.011 | 0.005 | 0.015 | |
| graper | 0.019 | 0.007 | 0.026 | |
| makeExampleData | 0.002 | 0.001 | 0.003 | |
| makeExampleDataWithUnequalGroups | 0.002 | 0.000 | 0.003 | |
| plotELBO | 0.117 | 0.009 | 0.132 | |
| plotGroupPenalties | 0.361 | 0.006 | 0.377 | |
| plotPosterior | 0.330 | 0.012 | 0.355 | |
| predict.graper | 0.215 | 0.037 | 0.261 | |
| print.graper | 0.011 | 0.004 | 0.016 | |