Britta Velten
| Snapshot Date: 2026-03-03 13:40 -0500 (Tue, 03 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: devel |
| git_last_commit: 95474d7 |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-04 11:35 -0500 (Wed, 04 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4882 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4574 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 926/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.27.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| See other builds for graper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.27.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.27.0.tar.gz |
| StartedAt: 2026-03-03 20:11:06 -0500 (Tue, 03 Mar 2026) |
| EndedAt: 2026-03-03 20:11:38 -0500 (Tue, 03 Mar 2026) |
| EllapsedTime: 32.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.27.0’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fit_graper.cpp -o fit_graper.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-900.431
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-563.256
ELB improved by 337.175
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-508.304
ELB improved by 54.9526
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-482.951
ELB improved by 25.3526
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-473.768
ELB improved by 9.18332
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.595
ELB improved by 5.17301
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.979
ELB improved by 4.6157
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.224
ELB improved by 4.75511
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.167
ELB improved by 5.05686
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.977
ELB improved by 5.19028
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.079
ELB improved by 4.89746
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.847
ELB improved by 4.23272
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.316
ELB improved by 3.53067
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.329
ELB improved by 2.98717
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.857
ELB improved by 2.4717
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.938
ELB improved by 1.91928
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.524
ELB improved by 1.41403
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.509
ELB improved by 1.01499
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.766
ELB improved by 0.74258
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.197
ELB improved by 0.569548
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.74
ELB improved by 0.457226
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.36
ELB improved by 0.379086
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.039
ELB improved by 0.321589
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.76
ELB improved by 0.278519
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.514
ELB improved by 0.246323
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.292
ELB improved by 0.22226
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.088
ELB improved by 0.204141
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.897
ELB improved by 0.190355
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.718
ELB improved by 0.179773
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.546
ELB improved by 0.171613
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.381
ELB improved by 0.165324
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.22
ELB improved by 0.160518
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.063
ELB improved by 0.156924
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.909
ELB improved by 0.15437
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.756
ELB improved by 0.152764
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.604
ELB improved by 0.152079
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.452
ELB improved by 0.152315
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.298
ELB improved by 0.15342
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.143
ELB improved by 0.155153
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.986
ELB improved by 0.156937
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.828
ELB improved by 0.157846
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.671
ELB improved by 0.1569
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.518
ELB improved by 0.153612
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.369
ELB improved by 0.148288
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.228
ELB improved by 0.141738
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.093
ELB improved by 0.134744
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.965
ELB improved by 0.127784
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.844
ELB improved by 0.121065
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.729
ELB improved by 0.114658
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.621
ELB improved by 0.108587
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.518
ELB improved by 0.10287
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.421
ELB improved by 0.0975215
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.328
ELB improved by 0.0925582
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.24
ELB improved by 0.0879914
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.156
ELB improved by 0.0838288
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.076
ELB improved by 0.0800736
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.999
ELB improved by 0.0767265
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.926
ELB improved by 0.0737861
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.854
ELB improved by 0.0712507
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.785
ELB improved by 0.0691196
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.718
ELB improved by 0.0673935
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.652
ELB improved by 0.0660756
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.587
ELB improved by 0.0651724
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.522
ELB improved by 0.0646933
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.457
ELB improved by 0.0646513
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.392
ELB improved by 0.0650626
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.326
ELB improved by 0.0659457
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.259
ELB improved by 0.0673205
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.19
ELB improved by 0.0692062
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.118
ELB improved by 0.0716189
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.043
ELB improved by 0.0745672
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.965
ELB improved by 0.078046
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.883
ELB improved by 0.0820273
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.797
ELB improved by 0.0864459
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.706
ELB improved by 0.0911791
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.61
ELB improved by 0.0960228
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.509
ELB improved by 0.10067
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.404
ELB improved by 0.104711
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.297
ELB improved by 0.107668
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.188
ELB improved by 0.109088
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.079
ELB improved by 0.108651
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.973
ELB improved by 0.106269
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.871
ELB improved by 0.102129
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.774
ELB improved by 0.0966656
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.683
ELB improved by 0.0904942
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.599
ELB improved by 0.0843574
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.52
ELB improved by 0.0791346
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.444
ELB improved by 0.0760232
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.367
ELB improved by 0.0771318
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.28
ELB improved by 0.0870969
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.163
ELB improved by 0.116938
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.974
ELB improved by 0.188266
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.668
ELB improved by 0.306548
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.297
ELB improved by 0.370868
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.001
ELB improved by 0.295712
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.801
ELB improved by 0.199891
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.644
ELB improved by 0.157628
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.487
ELB improved by 0.15722
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.296
ELB improved by 0.190548
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.032
ELB improved by 0.264141
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.653
ELB improved by 0.378628
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.155
ELB improved by 0.498657
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.565
ELB improved by 0.589976
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.905
ELB improved by 0.659415
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.23
ELB improved by 0.675623
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.642
ELB improved by 0.587228
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.21
ELB improved by 0.432453
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.93
ELB improved by 0.280011
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.762
ELB improved by 0.168013
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.662
ELB improved by 0.0998005
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.601
ELB improved by 0.0608151
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.563
ELB improved by 0.0386171
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.537
ELB improved by 0.0257913
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.519
ELB improved by 0.0181907
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.505
ELB improved by 0.0135457
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.495
ELB improved by 0.0106112
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.486
ELB improved by 0.00869086
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-839.414
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-573.06
ELB improved by 266.354
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-513.568
ELB improved by 59.4925
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-476.758
ELB improved by 36.8094
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.095
ELB improved by 15.6634
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.337
ELB improved by 5.75805
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.808
ELB improved by 2.52849
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.299
ELB improved by 1.50906
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.21
ELB improved by 1.0888
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.322
ELB improved by 0.888392
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.534
ELB improved by 0.787759
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.795
ELB improved by 0.739466
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.071
ELB improved by 0.724121
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.337
ELB improved by 0.734104
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.57
ELB improved by 0.766996
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.747
ELB improved by 0.822446
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.847
ELB improved by 0.90026
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.848
ELB improved by 0.998912
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.734
ELB improved by 1.11405
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.498
ELB improved by 1.23568
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.156
ELB improved by 1.34236
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.757
ELB improved by 1.39869
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.384
ELB improved by 1.37276
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.118
ELB improved by 1.26681
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.999
ELB improved by 1.11877
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.028
ELB improved by 0.971065
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.18
ELB improved by 0.847337
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.428
ELB improved by 0.752557
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.746
ELB improved by 0.682062
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.117
ELB improved by 0.62831
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.533
ELB improved by 0.584016
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.99
ELB improved by 0.543364
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.488
ELB improved by 0.502479
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.028
ELB improved by 0.459555
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.613
ELB improved by 0.414687
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.244
ELB improved by 0.369297
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.919
ELB improved by 0.325211
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.635
ELB improved by 0.283755
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.39
ELB improved by 0.245472
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.179
ELB improved by 0.210609
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.999
ELB improved by 0.179688
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.846
ELB improved by 0.153404
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.714
ELB improved by 0.132105
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.598
ELB improved by 0.11557
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.495
ELB improved by 0.103193
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.401
ELB improved by 0.094234
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.313
ELB improved by 0.0879117
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.23
ELB improved by 0.0833599
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.15
ELB improved by 0.0795532
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.075
ELB improved by 0.0753633
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.005
ELB improved by 0.0698661
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.942
ELB improved by 0.0627818
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.887
ELB improved by 0.0546417
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.841
ELB improved by 0.0464215
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.802
ELB improved by 0.038956
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.769
ELB improved by 0.0326383
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.742
ELB improved by 0.0274894
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.718
ELB improved by 0.0233547
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.698
ELB improved by 0.0200426
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.681
ELB improved by 0.0173827
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.666
ELB improved by 0.015238
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.652
ELB improved by 0.0135014
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.64
ELB improved by 0.0120895
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.629
ELB improved by 0.0109371
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.619
ELB improved by 0.00999275
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-863.73
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-555.738
ELB improved by 307.991
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-493.341
ELB improved by 62.3975
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.023
ELB improved by 34.3177
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.034
ELB improved by 14.9896
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.259
ELB improved by 7.77476
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.666
ELB improved by 5.5926
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.721
ELB improved by 4.94511
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.882
ELB improved by 4.83946
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.195
ELB improved by 4.68694
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.049
ELB improved by 4.146
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.797
ELB improved by 3.25172
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.462
ELB improved by 2.33539
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.799
ELB improved by 1.66271
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.558
ELB improved by 1.24034
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.592
ELB improved by 0.966497
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.799
ELB improved by 0.792623
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.097
ELB improved by 0.702435
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.425
ELB improved by 0.67193
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.794
ELB improved by 0.631342
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.292
ELB improved by 0.501628
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.945
ELB improved by 0.347465
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.706
ELB improved by 0.238108
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.535
ELB improved by 0.171565
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.403
ELB improved by 0.13165
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.296
ELB improved by 0.10683
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.206
ELB improved by 0.0906703
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.126
ELB improved by 0.079545
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.055
ELB improved by 0.0713988
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.99
ELB improved by 0.0651023
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.93
ELB improved by 0.0600421
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.874
ELB improved by 0.0558745
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.821
ELB improved by 0.0523935
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.772
ELB improved by 0.0494654
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.725
ELB improved by 0.0469966
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.68
ELB improved by 0.0449176
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.637
ELB improved by 0.0431748
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.595
ELB improved by 0.041726
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.555
ELB improved by 0.0405366
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.515
ELB improved by 0.0395787
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.476
ELB improved by 0.0388291
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.438
ELB improved by 0.0382684
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.4
ELB improved by 0.0378805
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.362
ELB improved by 0.037652
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.325
ELB improved by 0.0375714
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.287
ELB improved by 0.0376289
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.249
ELB improved by 0.0378163
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.211
ELB improved by 0.0381264
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.173
ELB improved by 0.038553
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.134
ELB improved by 0.0390906
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.094
ELB improved by 0.0397343
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.053
ELB improved by 0.0404798
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.012
ELB improved by 0.0413231
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.97
ELB improved by 0.0422608
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.926
ELB improved by 0.0432901
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.882
ELB improved by 0.044409
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.836
ELB improved by 0.0456163
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.79
ELB improved by 0.0469122
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.741
ELB improved by 0.0482985
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.691
ELB improved by 0.0497789
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.64
ELB improved by 0.0513599
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.587
ELB improved by 0.0530506
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.532
ELB improved by 0.0548642
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.475
ELB improved by 0.0568177
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.416
ELB improved by 0.0589334
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.355
ELB improved by 0.0612392
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.291
ELB improved by 0.0637705
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.225
ELB improved by 0.0665714
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.155
ELB improved by 0.0696977
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.082
ELB improved by 0.0732206
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.005
ELB improved by 0.0772327
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.923
ELB improved by 0.0818572
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.836
ELB improved by 0.087263
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.742
ELB improved by 0.0936878
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.64
ELB improved by 0.101477
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.529
ELB improved by 0.111149
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.406
ELB improved by 0.123497
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.266
ELB improved by 0.139741
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.104
ELB improved by 0.161699
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.913
ELB improved by 0.191736
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.681
ELB improved by 0.23174
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.401
ELB improved by 0.27998
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.073
ELB improved by 0.327555
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.71
ELB improved by 0.363266
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.322
ELB improved by 0.388057
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.9
ELB improved by 0.422198
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.384
ELB improved by 0.515841
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.594
ELB improved by 0.790135
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.325
ELB improved by 1.269
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.93
ELB improved by 1.39438
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.828
ELB improved by 1.10228
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.047
ELB improved by 0.780834
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.517
ELB improved by 0.530423
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.166
ELB improved by 0.350676
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.938
ELB improved by 0.227832
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.79
ELB improved by 0.148058
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.692
ELB improved by 0.0982865
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.624
ELB improved by 0.0676606
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.576
ELB improved by 0.048529
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.54
ELB improved by 0.0360902
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.512
ELB improved by 0.0275488
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.491
ELB improved by 0.0213764
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.474
ELB improved by 0.0167773
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.461
ELB improved by 0.0133292
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.45
ELB improved by 0.0107692
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.441
ELB improved by 0.0088945
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-889.973
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-611.634
ELB improved by 278.339
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-554.26
ELB improved by 57.3738
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-511.031
ELB improved by 43.2291
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-488.189
ELB improved by 22.8419
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-476.908
ELB improved by 11.281
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.991
ELB improved by 7.91651
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.124
ELB improved by 7.86726
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.836
ELB improved by 8.28779
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.291
ELB improved by 7.54472
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.546
ELB improved by 5.74506
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.453
ELB improved by 4.09339
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.252
ELB improved by 3.20057
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.557
ELB improved by 2.69523
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.493
ELB improved by 2.06453
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.925
ELB improved by 1.56746
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.475
ELB improved by 1.45022
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.938
ELB improved by 1.53666
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.724
ELB improved by 1.21413
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.958
ELB improved by 0.766539
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.429
ELB improved by 0.528464
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.017
ELB improved by 0.412656
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.667
ELB improved by 0.349396
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.357
ELB improved by 0.309872
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.075
ELB improved by 0.281859
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.815
ELB improved by 0.260253
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.572
ELB improved by 0.243487
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.34
ELB improved by 0.231402
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.116
ELB improved by 0.22386
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.896
ELB improved by 0.220316
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.676
ELB improved by 0.220005
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.454
ELB improved by 0.222188
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.228
ELB improved by 0.226264
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.996
ELB improved by 0.231789
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.757
ELB improved by 0.238462
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.511
ELB improved by 0.246118
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.257
ELB improved by 0.254701
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.992
ELB improved by 0.264243
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.717
ELB improved by 0.274808
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.431
ELB improved by 0.286419
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.132
ELB improved by 0.298965
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.82
ELB improved by 0.3121
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.495
ELB improved by 0.32516
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.158
ELB improved by 0.337114
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.811
ELB improved by 0.346602
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.459
ELB improved by 0.352088
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.107
ELB improved by 0.352158
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.761
ELB improved by 0.34591
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.428
ELB improved by 0.33335
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.112
ELB improved by 0.315609
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.817
ELB improved by 0.294882
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.543
ELB improved by 0.274044
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.287
ELB improved by 0.256009
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.044
ELB improved by 0.242756
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.81
ELB improved by 0.23395
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.585
ELB improved by 0.225852
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.372
ELB improved by 0.21291
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.179
ELB improved by 0.192468
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.012
ELB improved by 0.167031
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.871
ELB improved by 0.141048
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.754
ELB improved by 0.117439
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.657
ELB improved by 0.0970803
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.577
ELB improved by 0.0797651
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.512
ELB improved by 0.0650549
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.459
ELB improved by 0.0526469
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.417
ELB improved by 0.0423788
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.383
ELB improved by 0.0341018
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.355
ELB improved by 0.0275931
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.332
ELB improved by 0.0225617
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.314
ELB improved by 0.0186999
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.298
ELB improved by 0.0157312
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.285
ELB improved by 0.0134319
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.273
ELB improved by 0.0116317
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.263
ELB improved by 0.0102051
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.254
ELB improved by 0.00906058
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
1.129 0.100 1.255
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.013 | 0.006 | 0.028 | |
| getPIPs | 0.011 | 0.007 | 0.017 | |
| graper | 0.020 | 0.007 | 0.026 | |
| makeExampleData | 0.002 | 0.001 | 0.002 | |
| makeExampleDataWithUnequalGroups | 0.002 | 0.000 | 0.002 | |
| plotELBO | 0.114 | 0.008 | 0.141 | |
| plotGroupPenalties | 0.350 | 0.007 | 0.397 | |
| plotPosterior | 0.323 | 0.013 | 0.352 | |
| predict.graper | 0.221 | 0.032 | 0.271 | |
| print.graper | 0.011 | 0.005 | 0.020 | |