Multiple platform build/check report for BioC 3.23 - CHECK results for graper on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4869
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4576
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on nebbiolo1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.27.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz

StartedAt: 2025-12-06 00:08:18 -0500 (Sat, 06 Dec 2025)

EndedAt: 2025-12-06 00:09:50 -0500 (Sat, 06 Dec 2025)

EllapsedTime: 91.1 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2025-10-20 r88955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** this is package ‘graper’ version ‘1.27.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c fit_graper.cpp -o fit_graper.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.23-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-915.35
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-579.831
ELB improved by 335.519

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-521.395
ELB improved by 58.4356

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-489.871
ELB improved by 31.5245

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-476.213
ELB improved by 13.6574

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-470.02
ELB improved by 6.19306

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.692
ELB improved by 4.3281

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.437
ELB improved by 4.25497

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.484
ELB improved by 4.95325

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.17
ELB improved by 6.31352

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.16
ELB improved by 8.01085

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.382
ELB improved by 8.77733

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.96
ELB improved by 7.42182

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.012
ELB improved by 4.94829

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.04
ELB improved by 2.97177

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.248
ELB improved by 1.79243

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.117
ELB improved by 1.13122

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.36
ELB improved by 0.757126

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.825
ELB improved by 0.53497

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.432
ELB improved by 0.392823

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.136
ELB improved by 0.296278

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.907
ELB improved by 0.228904

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.725
ELB improved by 0.181212

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.579
ELB improved by 0.146758

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.458
ELB improved by 0.121174

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.356
ELB improved by 0.101632

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.27
ELB improved by 0.0863355

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.195
ELB improved by 0.0741195

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.131
ELB improved by 0.0642055

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.075
ELB improved by 0.0560523

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.026
ELB improved by 0.0492717

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.982
ELB improved by 0.0435779

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.944
ELB improved by 0.0387558

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.909
ELB improved by 0.0346411

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.878
ELB improved by 0.0311064

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.85
ELB improved by 0.0280514

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.824
ELB improved by 0.0253965

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.801
ELB improved by 0.0230777

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.78
ELB improved by 0.0210434

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.761
ELB improved by 0.0192512

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.743
ELB improved by 0.0176663

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.727
ELB improved by 0.0162599

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.712
ELB improved by 0.0150079

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.698
ELB improved by 0.0138901

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.685
ELB improved by 0.0128894

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.673
ELB improved by 0.0119913

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.662
ELB improved by 0.0111835

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.652
ELB improved by 0.0104554

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.642
ELB improved by 0.00979788

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-865.213
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-588.085
ELB improved by 277.128

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-527.374
ELB improved by 60.7107

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.525
ELB improved by 41.8491

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.157
ELB improved by 21.3678

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.869
ELB improved by 9.28885

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.526
ELB improved by 5.34262

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.121
ELB improved by 4.40486

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.896
ELB improved by 4.22555

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.714
ELB improved by 4.18163

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.677
ELB improved by 4.03676

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.031
ELB improved by 3.64583

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.028
ELB improved by 3.00361

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.79
ELB improved by 2.23737

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.262
ELB improved by 1.52842

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.258
ELB improved by 1.00394

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.585
ELB improved by 0.672858

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.107
ELB improved by 0.477952

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.745
ELB improved by 0.361938

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.457
ELB improved by 0.288663

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.218
ELB improved by 0.238957

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.015
ELB improved by 0.20308

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.839
ELB improved by 0.175938

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.684
ELB improved by 0.154697

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.546
ELB improved by 0.13766

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.423
ELB improved by 0.123744

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.31
ELB improved by 0.112214

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.208
ELB improved by 0.10255

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.113
ELB improved by 0.0943696

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.026
ELB improved by 0.0873832

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.945
ELB improved by 0.0813681

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.868
ELB improved by 0.0761499

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.797
ELB improved by 0.0715904

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.729
ELB improved by 0.0675789

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.665
ELB improved by 0.0640268

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.604
ELB improved by 0.060862

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.546
ELB improved by 0.0580264

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.491
ELB improved by 0.0554724

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.438
ELB improved by 0.0531614

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.387
ELB improved by 0.0510619

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.338
ELB improved by 0.0491481

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.29
ELB improved by 0.047399

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.244
ELB improved by 0.0457974

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.2
ELB improved by 0.0443291

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.157
ELB improved by 0.0429824

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.115
ELB improved by 0.0417477

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.075
ELB improved by 0.040617

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.035
ELB improved by 0.0395833

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.996
ELB improved by 0.0386407

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.959
ELB improved by 0.0377841

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.922
ELB improved by 0.0370087

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.885
ELB improved by 0.0363104

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.85
ELB improved by 0.035685

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.815
ELB improved by 0.0351287

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.78
ELB improved by 0.0346376

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.746
ELB improved by 0.0342078

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.712
ELB improved by 0.0338354

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.678
ELB improved by 0.033516

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.645
ELB improved by 0.0332454

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.612
ELB improved by 0.033019

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.579
ELB improved by 0.0328318

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.547
ELB improved by 0.0326789

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.514
ELB improved by 0.0325551

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.482
ELB improved by 0.0324553

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.449
ELB improved by 0.0323743

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.417
ELB improved by 0.0323075

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.385
ELB improved by 0.0322505

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.352
ELB improved by 0.0321996

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.32
ELB improved by 0.032152

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.288
ELB improved by 0.0321053

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.256
ELB improved by 0.0320582

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.224
ELB improved by 0.0320097

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.192
ELB improved by 0.0319596

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.16
ELB improved by 0.0319077

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.128
ELB improved by 0.0318539

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.097
ELB improved by 0.0317981

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.065
ELB improved by 0.0317398

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.033
ELB improved by 0.031678

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.002
ELB improved by 0.0316114

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.97
ELB improved by 0.0315382

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.939
ELB improved by 0.0314562

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.907
ELB improved by 0.0313625

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.876
ELB improved by 0.0312544

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.845
ELB improved by 0.0311284

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.814
ELB improved by 0.0309814

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.783
ELB improved by 0.0308099

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.752
ELB improved by 0.0306107

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.722
ELB improved by 0.0303805

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.692
ELB improved by 0.0301168

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.662
ELB improved by 0.029817

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.633
ELB improved by 0.0294794

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.604
ELB improved by 0.0291028

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.575
ELB improved by 0.0286868

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.547
ELB improved by 0.0282319

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.519
ELB improved by 0.0277394

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.492
ELB improved by 0.0272113

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.465
ELB improved by 0.0266509

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.439
ELB improved by 0.026062

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.413
ELB improved by 0.0254491

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.389
ELB improved by 0.0248177

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.364
ELB improved by 0.0241735

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.341
ELB improved by 0.0235228

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.318
ELB improved by 0.022872

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.296
ELB improved by 0.0222279

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.274
ELB improved by 0.0215974

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.253
ELB improved by 0.0209874

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.233
ELB improved by 0.0204048

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.213
ELB improved by 0.0198569

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.194
ELB improved by 0.019351

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.175
ELB improved by 0.0188946

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.156
ELB improved by 0.0184961

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.138
ELB improved by 0.0181643

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.12
ELB improved by 0.0179091

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.102
ELB improved by 0.0177422

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.085
ELB improved by 0.0176768

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.067
ELB improved by 0.0177292

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.049
ELB improved by 0.0179187

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.031
ELB improved by 0.0182692

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.012
ELB improved by 0.0188102

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.992
ELB improved by 0.0195791

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.972
ELB improved by 0.0206238

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.95
ELB improved by 0.0220083

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.926
ELB improved by 0.023821

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.9
ELB improved by 0.0261898

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.871
ELB improved by 0.0293042

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.837
ELB improved by 0.0334427

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.798
ELB improved by 0.0389867

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.752
ELB improved by 0.0463705

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.696
ELB improved by 0.0558794

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.629
ELB improved by 0.0672537

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.549
ELB improved by 0.0793334

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.459
ELB improved by 0.0902575

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.361
ELB improved by 0.0981782

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.259
ELB improved by 0.101569

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.16
ELB improved by 0.0991733

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.069
ELB improved by 0.0907677

iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.991
ELB improved by 0.0781123

iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.927
ELB improved by 0.0642374

iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.875
ELB improved by 0.0516266

iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.834
ELB improved by 0.0413248

iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.801
ELB improved by 0.0332902

iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.774
ELB improved by 0.0270539

iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.752
ELB improved by 0.0221286

iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.733
ELB improved by 0.0181505

iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.719
ELB improved by 0.0148836

iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.706
ELB improved by 0.0121823

iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.696
ELB improved by 0.00995307

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-878.561
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-586.752
ELB improved by 291.809

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-524.902
ELB improved by 61.8492

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-482.575
ELB improved by 42.3274

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.058
ELB improved by 19.5167

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.537
ELB improved by 6.52162

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.578
ELB improved by 2.95915

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.545
ELB improved by 2.03226

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.886
ELB improved by 1.65941

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.378
ELB improved by 1.5081

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.935
ELB improved by 1.4424

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.53
ELB improved by 1.40493

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.161
ELB improved by 1.36956

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.837
ELB improved by 1.32349

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.577
ELB improved by 1.26071

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.397
ELB improved by 1.17939

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.317
ELB improved by 1.08079

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.348
ELB improved by 0.968367

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.501
ELB improved by 0.846813

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.779
ELB improved by 0.722105

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.177
ELB improved by 0.60191

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.683
ELB improved by 0.493972

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.28
ELB improved by 0.403193

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.95
ELB improved by 0.330513

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.676
ELB improved by 0.274095

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.445
ELB improved by 0.231028

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.246
ELB improved by 0.198398

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.072
ELB improved by 0.173708

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.917
ELB improved by 0.154965

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.777
ELB improved by 0.140642

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.647
ELB improved by 0.129603

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.526
ELB improved by 0.121017

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.412
ELB improved by 0.114281

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.303
ELB improved by 0.108947

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.198
ELB improved by 0.104685

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.097
ELB improved by 0.10124

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.999
ELB improved by 0.0984191

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.903
ELB improved by 0.0960684

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.808
ELB improved by 0.094067

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.716
ELB improved by 0.0923185

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.625
ELB improved by 0.0907463

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.536
ELB improved by 0.0892908

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.448
ELB improved by 0.0879077

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.362
ELB improved by 0.0865669

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.276
ELB improved by 0.0852514

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.192
ELB improved by 0.0839572

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.11
ELB improved by 0.0826914

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.028
ELB improved by 0.0814717

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.948
ELB improved by 0.0803243

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.869
ELB improved by 0.0792825

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.79
ELB improved by 0.0783843

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.713
ELB improved by 0.0776714

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.635
ELB improved by 0.0771866

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.558
ELB improved by 0.0769726

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.481
ELB improved by 0.0770706

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.404
ELB improved by 0.0775191

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.326
ELB improved by 0.0783539

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.246
ELB improved by 0.0796087

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.165
ELB improved by 0.0813187

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.081
ELB improved by 0.083527

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.995
ELB improved by 0.0862964

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.905
ELB improved by 0.0897262

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.811
ELB improved by 0.0939756

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.712
ELB improved by 0.0992947

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.606
ELB improved by 0.106066

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.491
ELB improved by 0.114864

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.364
ELB improved by 0.126535

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.222
ELB improved by 0.14229

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.058
ELB improved by 0.163727

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.866
ELB improved by 0.192577

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.636
ELB improved by 0.229865

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.361
ELB improved by 0.274712

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.037
ELB improved by 0.324456

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.659
ELB improved by 0.377248

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.226
ELB improved by 0.433764

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.731
ELB improved by 0.494544

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.176
ELB improved by 0.555294

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.572
ELB improved by 0.603981

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.948
ELB improved by 0.624248

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.341
ELB improved by 0.606805

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.783
ELB improved by 0.558275

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.285
ELB improved by 0.497152

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.844
ELB improved by 0.440876

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.452
ELB improved by 0.392254

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.118
ELB improved by 0.334203

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.864
ELB improved by 0.253834

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.692
ELB improved by 0.172086

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.579
ELB improved by 0.113449

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.5
ELB improved by 0.0787492

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.44
ELB improved by 0.0600026

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.388
ELB improved by 0.0518139

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.336
ELB improved by 0.0525302

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.272
ELB improved by 0.0637845

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.182
ELB improved by 0.0899588

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.049
ELB improved by 0.132538

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.878
ELB improved by 0.171417

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.713
ELB improved by 0.164893

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.598
ELB improved by 0.114878

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.532
ELB improved by 0.0665021

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.494
ELB improved by 0.0376202

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.471
ELB improved by 0.0226706

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.456
ELB improved by 0.0149481

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.446
ELB improved by 0.0107854

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.437
ELB improved by 0.00841639

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-820.452
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-566.305
ELB improved by 254.147

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-502.043
ELB improved by 64.2624

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.085
ELB improved by 47.958

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.604
ELB improved by 21.4807

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.585
ELB improved by 9.01894

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.665
ELB improved by 4.92002

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.219
ELB improved by 3.44635

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.305
ELB improved by 2.91398

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.544
ELB improved by 2.76027

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.771
ELB improved by 2.77372

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.898
ELB improved by 2.87293

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.875
ELB improved by 3.02287

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.69
ELB improved by 3.18469

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.411
ELB improved by 3.27892

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.232
ELB improved by 3.17917

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.431
ELB improved by 2.80123

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.163
ELB improved by 2.26766

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.346
ELB improved by 1.81681

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.945
ELB improved by 1.40088

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.013
ELB improved by 0.932635

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.395
ELB improved by 0.618083

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.957
ELB improved by 0.437271

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.631
ELB improved by 0.326022

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.37
ELB improved by 0.261494

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.143
ELB improved by 0.226716

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.935
ELB improved by 0.208051

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.738
ELB improved by 0.19745

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.547
ELB improved by 0.190704

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.361
ELB improved by 0.185565

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.181
ELB improved by 0.180784

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.005
ELB improved by 0.175684

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.835
ELB improved by 0.169962

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.671
ELB improved by 0.163578

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.515
ELB improved by 0.156674

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.365
ELB improved by 0.149502

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.223
ELB improved by 0.142363

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.087
ELB improved by 0.135555

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.958
ELB improved by 0.129331

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.834
ELB improved by 0.123883

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.715
ELB improved by 0.119336

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.599
ELB improved by 0.115755

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.486
ELB improved by 0.113157

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.374
ELB improved by 0.111526

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.264
ELB improved by 0.110827

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.153
ELB improved by 0.111013

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.04
ELB improved by 0.112033

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.927
ELB improved by 0.113834

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.81
ELB improved by 0.11636

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.691
ELB improved by 0.119552

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.567
ELB improved by 0.123344

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.44
ELB improved by 0.127661

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.307
ELB improved by 0.132418

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.17
ELB improved by 0.137521

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.027
ELB improved by 0.142875

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.879
ELB improved by 0.14839

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.725
ELB improved by 0.153989

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.565
ELB improved by 0.159605

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.4
ELB improved by 0.165132

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.229
ELB improved by 0.170316

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.055
ELB improved by 0.17456

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.878
ELB improved by 0.17678

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.703
ELB improved by 0.1756

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.532
ELB improved by 0.170043

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.372
ELB improved by 0.160267

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.225
ELB improved by 0.147518

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.091
ELB improved by 0.133357

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.972
ELB improved by 0.119009

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.867
ELB improved by 0.105223

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.775
ELB improved by 0.0924062

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.694
ELB improved by 0.0807574

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.624
ELB improved by 0.0703483

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.562
ELB improved by 0.0611698

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.509
ELB improved by 0.0531618

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.463
ELB improved by 0.0462348

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.423
ELB improved by 0.0402841

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.388
ELB improved by 0.0352002

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.357
ELB improved by 0.0308755

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.329
ELB improved by 0.0272084

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.305
ELB improved by 0.0241058

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.284
ELB improved by 0.0214845

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.265
ELB improved by 0.0192716

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.247
ELB improved by 0.017404

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.231
ELB improved by 0.0158281

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.217
ELB improved by 0.0144985

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.204
ELB improved by 0.013377

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.191
ELB improved by 0.0124315

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.179
ELB improved by 0.0116352

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.168
ELB improved by 0.0109649

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.158
ELB improved by 0.0104008

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.148
ELB improved by 0.00992547

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.333   0.208   2.528

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.051	0.013	0.066
getPIPs	0.049	0.015	0.062
graper	0.079	0.021	0.099
makeExampleData	0.009	0.001	0.011
makeExampleDataWithUnequalGroups	0.010	0.003	0.012
plotELBO	0.316	0.039	0.356
plotGroupPenalties	1.083	0.053	1.137
plotPosterior	0.618	0.018	0.637
predict.graper	2.066	0.065	2.132
print.graper	0.049	0.014	0.063