Package: HDF5Array

Version: 1.15.2

Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL HDF5Array

StartedAt: 2020-01-24 02:07:26 -0500 (Fri, 24 Jan 2020)

EndedAt: 2020-01-24 02:07:53 -0500 (Fri, 24 Jan 2020)

EllapsedTime: 27.5 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL HDF5Array
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc-testing/Rlibs’
* installing *source* package ‘HDF5Array’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c DSetHandle.c -o DSetHandle.o
DSetHandle.c: In function ‘_get_DSetHandle’:
DSetHandle.c:100:6: warning: ‘storage_mode_attr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  if (strcmp(storage_mode, "integer") == 0) {
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DSetHandle.c:220:8: note: ‘storage_mode_attr’ was declared here
  char *storage_mode_attr;
        ^~~~~~~~~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c R_init_HDF5Array.c -o R_init_HDF5Array.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c array_selection.c -o array_selection.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c h5mread.c -o h5mread.o
h5mread.c:1303:22: warning: ‘select_elements_from_chunk’ defined but not used [-Wunused-function]
 static long long int select_elements_from_chunk(const DSetHandle *dset_handle,
                      ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o HDF5Array.so DSetHandle.o R_init_HDF5Array.o S4Vectors_stubs.o array_selection.o h5mread.o /home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/lib/libhdf5.a /home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/lib/libsz.a -lz -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc-testing/Rlibs/00LOCK-HDF5Array/00new/HDF5Array/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HDF5Array)