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This page was generated on 2025-10-18 12:04 -0400 (Sat, 18 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4887
lconwaymacOS 12.7.6 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4677
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4622
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4632
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2138/2353HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
structToolbox 1.21.0  (landing page)
Gavin Rhys Lloyd
Snapshot Date: 2025-10-17 13:45 -0400 (Fri, 17 Oct 2025)
git_url: https://git.bioconductor.org/packages/structToolbox
git_branch: devel
git_last_commit: 36d5ff1
git_last_commit_date: 2025-04-15 11:54:06 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  NO, package depends on 'struct' which is not available
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'struct' which is not available
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'struct' which is not available
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for structToolbox on nebbiolo2

To the developers/maintainers of the structToolbox package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/structToolbox.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: structToolbox
Version: 1.21.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:structToolbox.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings structToolbox_1.21.0.tar.gz
StartedAt: 2025-10-18 05:21:09 -0400 (Sat, 18 Oct 2025)
EndedAt: 2025-10-18 05:39:17 -0400 (Sat, 18 Oct 2025)
EllapsedTime: 1088.0 seconds
RetCode: 0
Status:   OK  
CheckDir: structToolbox.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:structToolbox.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings structToolbox_1.21.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/structToolbox.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘structToolbox/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘structToolbox’ version ‘1.21.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘structToolbox’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                            user system elapsed
fold_change_int           15.336  0.051  15.387
fold_change               10.389  0.055  10.444
fisher_exact               9.210  0.062   9.273
fs_line                    6.636  0.040   6.675
forward_selection_by_rank  6.435  0.137   6.571
compare_dist               4.985  0.104   5.089
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

structToolbox.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL structToolbox
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘structToolbox’ ...
** this is package ‘structToolbox’ version ‘1.21.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (structToolbox)

Tests output

structToolbox.Rcheck/tests/testthat.Rout


R version 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(ggplot2)
> library(structToolbox)
Loading required package: struct
> 
> test_check("structToolbox")
[ FAIL 0 | WARN 6 | SKIP 0 | PASS 166 ]

[ FAIL 0 | WARN 6 | SKIP 0 | PASS 166 ]
> 
> proc.time()
   user  system elapsed 
178.676   1.848 180.519 

Example timings

structToolbox.Rcheck/structToolbox-Ex.timings

nameusersystemelapsed
ANOVA0.1940.0040.198
AUC1.9270.1282.055
DFA0.1780.0000.178
DatasetExperiment_boxplot0.9920.0241.016
DatasetExperiment_dist1.3240.0291.354
DatasetExperiment_factor_boxplot0.3170.0030.321
DatasetExperiment_heatmap1.2000.0041.205
HCA0.0560.0000.056
HSD0.2560.0010.258
HSDEM0.2610.0020.263
MTBLS79_DatasetExperiment0.0010.0000.001
OPLSDA0.0110.0000.011
OPLSR0.0080.0000.007
PCA0.0040.0000.004
PLSDA0.0110.0000.012
PLSR0.0090.0000.009
SVM0.0180.0010.021
as_data_frame0.1370.0020.138
autoscale0.0640.0000.064
balanced_accuracy1.6440.0011.646
blank_filter0.3160.0060.324
blank_filter_hist000
bootstrap0.0090.0000.009
calculate0.0050.0000.005
chart_plot0.0290.0000.029
classical_lsq0.3030.0000.302
compare_dist4.9850.1045.089
confounders_clsq2.7100.0032.714
confounders_lsq_barchart2.9950.0283.023
confounders_lsq_boxplot2.9160.0042.921
constant_sum_norm0.0060.0010.007
corr_coef0.2500.0010.251
dfa_scores_plot0.9140.0040.919
dratio_filter0.2360.0000.236
equal_split0.1080.0000.108
feature_boxplot0.0240.0000.024
feature_profile0.4950.0000.496
feature_profile_array0.5860.0000.586
filter_by_name0.0380.0010.039
filter_na_count0.9050.0020.908
filter_smeta0.0660.0010.067
fisher_exact9.2100.0629.273
fold_change10.389 0.05510.444
fold_change_int15.336 0.05115.387
fold_change_plot0.0070.0000.007
forward_selection_by_rank6.4350.1376.571
fs_line6.6360.0406.675
glog_opt_plot0.5500.0010.551
glog_transform0.2860.0000.286
grid_search_1d3.3720.0163.388
gs_line0.0010.0000.001
hca_dendrogram0.0010.0000.001
kfold_xval3.3400.0043.346
kfoldxcv_grid3.8710.0073.878
kfoldxcv_metric0.0010.0000.001
knn_impute0.0120.0000.011
kw_p_hist0.0010.0000.000
kw_rank_sum0.0730.0000.072
linear_model0.0280.0000.028
log_transform0.0060.0000.006
mean_centre0.0020.0000.003
mean_of_medians0.1090.0000.109
mixed_effect0.1550.0000.155
model_apply0.0230.0000.023
model_predict0.0640.0000.064
model_reverse0.0260.0000.025
model_train0.0480.0000.048
mv_boxplot0.4090.0000.408
mv_feature_filter0.110.000.11
mv_feature_filter_hist0.0000.0000.001
mv_histogram0.3520.0000.352
mv_sample_filter0.0080.0000.008
mv_sample_filter_hist0.0010.0000.001
nroot_transform0.0060.0000.006
ontology_cache0.0000.0010.000
pairs_filter0.0090.0000.009
pareto_scale0.0540.0000.054
pca_biplot0.0140.0000.015
pca_correlation_plot0.0060.0000.006
pca_dstat_plot0.0080.0000.008
pca_loadings_plot0.0090.0000.009
pca_scores_plot0.7180.0000.718
pca_scree_plot0.0060.0000.006
permutation_test0.0080.0000.009
permutation_test_plot0.0030.0000.003
permute_sample_order0.0070.0000.007
pls_regcoeff_plot0.4470.0000.447
pls_scores_plot0.860.000.86
pls_vip_plot0.4960.0120.509
plsda_feature_importance_plot0.8680.0190.886
plsda_predicted_plot0.5800.0040.585
plsda_roc_plot1.1810.0011.182
plsr_cook_dist0.0070.0000.007
plsr_prediction_plot0.0070.0000.006
plsr_qq_plot0.0060.0000.006
plsr_residual_hist0.0050.0010.006
pqn_norm0.3450.0020.347
pqn_norm_hist0.0000.0000.001
prop_na0.0090.0000.009
r_squared000
resample0.0140.0000.014
resample_chart0.0020.0000.002
rsd_filter0.0130.0000.013
rsd_filter_hist0.0000.0000.001
run0.0290.0010.031
sb_corr0.0230.0020.026
scatter_chart0.5420.0000.543
split_data0.0070.0000.008
stratified_split0.1260.0010.127
svm_plot_2d0.7840.0010.785
tSNE0.0390.0010.041
tSNE_scatter0.0070.0000.008
tic_chart0.3290.0000.329
ttest0.0210.0000.021
vec_norm0.0010.0000.000
wilcox_p_hist0.0010.0000.001
wilcox_test0.0170.0000.017