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This page was generated on 2026-01-23 11:35 -0500 (Fri, 23 Jan 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4808
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4542
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2133/2345HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
structToolbox 1.23.0  (landing page)
Gavin Rhys Lloyd
Snapshot Date: 2026-01-22 13:40 -0500 (Thu, 22 Jan 2026)
git_url: https://git.bioconductor.org/packages/structToolbox
git_branch: devel
git_last_commit: e5436a2
git_last_commit_date: 2025-10-29 10:56:35 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for structToolbox on kjohnson3

To the developers/maintainers of the structToolbox package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/structToolbox.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: structToolbox
Version: 1.23.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:structToolbox.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings structToolbox_1.23.0.tar.gz
StartedAt: 2026-01-22 23:04:57 -0500 (Thu, 22 Jan 2026)
EndedAt: 2026-01-22 23:08:18 -0500 (Thu, 22 Jan 2026)
EllapsedTime: 200.4 seconds
RetCode: 0
Status:   OK  
CheckDir: structToolbox.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:structToolbox.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings structToolbox_1.23.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/structToolbox.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘structToolbox/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘structToolbox’ version ‘1.23.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘structToolbox’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
fold_change_int 5.621  0.009   6.282
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

structToolbox.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL structToolbox
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘structToolbox’ ...
** this is package ‘structToolbox’ version ‘1.23.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (structToolbox)

Tests output

structToolbox.Rcheck/tests/testthat.Rout


R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(ggplot2)
> library(structToolbox)
Loading required package: struct
> 
> test_check("structToolbox")
[ FAIL 0 | WARN 6 | SKIP 0 | PASS 166 ]

[ FAIL 0 | WARN 6 | SKIP 0 | PASS 166 ]
> 
> proc.time()
   user  system elapsed 
 63.705   0.669  69.529 

Example timings

structToolbox.Rcheck/structToolbox-Ex.timings

nameusersystemelapsed
ANOVA0.0720.0030.078
AUC0.9970.0281.130
DFA0.0650.0030.081
DatasetExperiment_boxplot0.3770.0100.417
DatasetExperiment_dist0.5950.0290.656
DatasetExperiment_factor_boxplot0.1110.0010.139
DatasetExperiment_heatmap0.5270.0110.565
HCA0.0210.0000.026
HSD0.1010.0090.117
HSDEM0.1270.0070.140
MTBLS79_DatasetExperiment0.0000.0000.001
OPLSDA0.0040.0000.003
OPLSR0.0020.0000.002
PCA0.0010.0000.001
PLSDA0.0030.0000.003
PLSR0.0030.0010.004
SVM0.0060.0000.006
as_data_frame0.0390.0000.040
autoscale0.0230.0000.024
balanced_accuracy0.5690.0040.612
blank_filter0.1320.0090.145
blank_filter_hist0.0000.0010.001
bootstrap0.0030.0000.003
calculate0.0020.0000.001
chart_plot0.0080.0000.009
classical_lsq0.1020.0000.114
compare_dist1.9290.0832.157
confounders_clsq0.9320.0061.054
confounders_lsq_barchart1.0020.0061.088
confounders_lsq_boxplot1.0050.0121.081
constant_sum_norm0.0020.0000.003
corr_coef0.0790.0000.086
dfa_scores_plot0.3300.0070.367
dratio_filter0.0870.0020.092
equal_split0.0340.0010.035
feature_boxplot0.0080.0000.010
feature_profile0.1660.0030.180
feature_profile_array0.2060.0030.234
filter_by_name0.0110.0000.013
filter_na_count0.3520.0230.409
filter_smeta0.0240.0010.028
fisher_exact2.9950.0053.205
fold_change3.9390.0154.345
fold_change_int5.6210.0096.282
fold_change_plot0.0020.0000.002
forward_selection_by_rank2.0230.0612.376
fs_line2.4030.0702.717
glog_opt_plot0.1950.0030.216
glog_transform0.0920.0000.111
grid_search_1d1.2450.0701.423
gs_line0.0000.0010.000
hca_dendrogram0.0010.0000.001
kfold_xval1.0780.0121.200
kfoldxcv_grid1.2560.0101.373
kfoldxcv_metric000
knn_impute0.0040.0010.004
kw_p_hist0.0000.0000.001
kw_rank_sum0.0280.0010.035
linear_model0.0090.0000.010
log_transform0.0020.0000.002
mean_centre0.0010.0000.001
mean_of_medians0.0370.0000.043
mixed_effect0.0560.0010.060
model_apply0.0080.0010.010
model_predict0.0170.0000.017
model_reverse0.0080.0000.008
model_train0.0160.0000.022
mv_boxplot0.1390.0040.153
mv_feature_filter0.0360.0010.041
mv_feature_filter_hist000
mv_histogram0.1190.0030.128
mv_sample_filter0.0030.0010.003
mv_sample_filter_hist000
nroot_transform0.0010.0000.002
ontology_cache000
pairs_filter0.0030.0000.004
pareto_scale0.0170.0010.018
pca_biplot0.0060.0000.006
pca_correlation_plot0.0020.0000.002
pca_dstat_plot0.0040.0000.003
pca_loadings_plot0.0030.0000.004
pca_scores_plot0.2320.0010.244
pca_scree_plot0.0020.0000.002
permutation_test0.0030.0000.002
permutation_test_plot0.0010.0000.001
permute_sample_order0.0020.0000.002
pls_regcoeff_plot0.1530.0010.164
pls_scores_plot0.2730.0010.290
pls_vip_plot0.1560.0010.162
plsda_feature_importance_plot0.2960.0050.326
plsda_predicted_plot0.2170.0020.245
plsda_roc_plot0.4350.0030.489
plsr_cook_dist0.0030.0000.002
plsr_prediction_plot0.0020.0000.002
plsr_qq_plot0.0020.0000.002
plsr_residual_hist0.0020.0000.002
pqn_norm0.1040.0010.110
pqn_norm_hist0.0010.0000.000
prop_na0.0030.0000.003
r_squared000
resample0.0050.0000.005
resample_chart0.0010.0000.001
rsd_filter0.0040.0000.005
rsd_filter_hist000
run0.0090.0000.010
sb_corr0.0080.0000.008
scatter_chart0.1780.0020.196
split_data0.0020.0000.003
stratified_split0.0450.0010.052
svm_plot_2d0.2840.0090.322
tSNE0.0070.0000.008
tSNE_scatter0.0020.0010.003
tic_chart0.1060.0000.126
ttest0.0070.0000.007
vec_norm0.0010.0000.001
wilcox_p_hist000
wilcox_test0.0070.0010.007