| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-01 13:07 -0400 (Wed, 01 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.6.0 alpha (2026-03-30 r89742) | 4816 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-03-28 r89739) | 4539 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1924/2374 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scDblFinder 1.25.4 (landing page) Pierre-Luc Germain
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for scDblFinder in R Universe. | ||||||||||||||
|
To the developers/maintainers of the scDblFinder package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scDblFinder.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: scDblFinder |
| Version: 1.25.4 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scDblFinder |
| StartedAt: 2026-03-31 17:30:58 -0400 (Tue, 31 Mar 2026) |
| EndedAt: 2026-03-31 17:31:40 -0400 (Tue, 31 Mar 2026) |
| EllapsedTime: 42.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scDblFinder
###
##############################################################################
##############################################################################
* checking for file ‘scDblFinder/DESCRIPTION’ ... OK
* preparing ‘scDblFinder’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘computeDoubletDensity.Rmd’ using rmarkdown
Quitting from computeDoubletDensity.Rmd:26-32 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'scRNAseq'
---
Backtrace:
▆
1. └─base::library(scRNAseq)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'computeDoubletDensity.Rmd' failed with diagnostics:
there is no package called 'scRNAseq'
--- failed re-building ‘computeDoubletDensity.Rmd’
--- re-building ‘findDoubletClusters.Rmd’ using rmarkdown
Quitting from findDoubletClusters.Rmd:26-32 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'scRNAseq'
---
Backtrace:
▆
1. └─base::library(scRNAseq)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'findDoubletClusters.Rmd' failed with diagnostics:
there is no package called 'scRNAseq'
--- failed re-building ‘findDoubletClusters.Rmd’
--- re-building ‘introduction.Rmd’ using rmarkdown
--- finished re-building ‘introduction.Rmd’
--- re-building ‘recoverDoublets.Rmd’ using rmarkdown
--- finished re-building ‘recoverDoublets.Rmd’
--- re-building ‘scATAC.Rmd’ using rmarkdown
--- finished re-building ‘scATAC.Rmd’
--- re-building ‘scDblFinder.Rmd’ using rmarkdown
--- finished re-building ‘scDblFinder.Rmd’
SUMMARY: processing the following files failed:
‘computeDoubletDensity.Rmd’ ‘findDoubletClusters.Rmd’
Error: Vignette re-building failed.
Execution halted