Multiple platform build/check report for BioC 3.22 - CHECK results for graper on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4764
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4586
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4529
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4554
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on nebbiolo2

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.25.2

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings graper_1.25.2.tar.gz

StartedAt: 2025-09-17 00:19:02 -0400 (Wed, 17 Sep 2025)

EndedAt: 2025-09-17 00:20:33 -0400 (Wed, 17 Sep 2025)

EllapsedTime: 91.2 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings graper_1.25.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.25.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... INFO
  installed size is  6.0Mb
  sub-directories of 1Mb or more:
    libs   5.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** this is package ‘graper’ version ‘1.25.2’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
In file included from /home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c fit_graper.cpp -o fit_graper.o
In file included from /home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from fit_graper.cpp:3:
/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.22-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.22-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.22-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.22-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-862.445
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-591.897
ELB improved by 270.548

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-530.793
ELB improved by 61.1036

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-483.745
ELB improved by 47.048

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.474
ELB improved by 22.2712

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.703
ELB improved by 7.77086

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.971
ELB improved by 3.73204

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.475
ELB improved by 2.49681

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.488
ELB improved by 1.98686

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.716
ELB improved by 1.77146

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.04
ELB improved by 1.67599

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.409
ELB improved by 1.63149

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.799
ELB improved by 1.61009

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.201
ELB improved by 1.59786

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.617
ELB improved by 1.58369

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.062
ELB improved by 1.55486

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.566
ELB improved by 1.49641

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.172
ELB improved by 1.39358

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.934
ELB improved by 1.23809

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.897
ELB improved by 1.03745

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.079
ELB improved by 0.817821

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.468
ELB improved by 0.611369

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.028
ELB improved by 0.439992

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.717
ELB improved by 0.310696

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.497
ELB improved by 0.21999

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.337
ELB improved by 0.159846

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.215
ELB improved by 0.12165

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.117
ELB improved by 0.098063

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.034
ELB improved by 0.0836807

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.959
ELB improved by 0.0749507

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.889
ELB improved by 0.0697253

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.822
ELB improved by 0.0667763

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.757
ELB improved by 0.0654288

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.691
ELB improved by 0.0653257

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.625
ELB improved by 0.0662873

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.557
ELB improved by 0.0682303

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.486
ELB improved by 0.0711219

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.411
ELB improved by 0.0749548

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.331
ELB improved by 0.0797361

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.246
ELB improved by 0.085483

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.153
ELB improved by 0.0922196

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.053
ELB improved by 0.0999697

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.945
ELB improved by 0.108741

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.826
ELB improved by 0.11851

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.697
ELB improved by 0.129211

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.556
ELB improved by 0.140757

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.403
ELB improved by 0.153078

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.237
ELB improved by 0.166171

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.057
ELB improved by 0.180144

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.862
ELB improved by 0.195229

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.65
ELB improved by 0.211785

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.419
ELB improved by 0.230302

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.168
ELB improved by 0.25139

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.892
ELB improved by 0.275775

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.588
ELB improved by 0.304254

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.25
ELB improved by 0.337625

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.874
ELB improved by 0.376568

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.452
ELB improved by 0.421462

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.98
ELB improved by 0.472133

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.453
ELB improved by 0.527541

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.867
ELB improved by 0.585449

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.225
ELB improved by 0.64208

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.534
ELB improved by 0.691652

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.808
ELB improved by 0.725795

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.074
ELB improved by 0.734228

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.364
ELB improved by 0.709251

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.712
ELB improved by 0.652296

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.137
ELB improved by 0.57543

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.64
ELB improved by 0.496433

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.207
ELB improved by 0.432908

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.809
ELB improved by 0.398008

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.418
ELB improved by 0.391117

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.038
ELB improved by 0.380402

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.707
ELB improved by 0.331146

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.436
ELB improved by 0.271011

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.19
ELB improved by 0.245391

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.926
ELB improved by 0.264149

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.617
ELB improved by 0.308727

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.28
ELB improved by 0.337455

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.963
ELB improved by 0.317193

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.695
ELB improved by 0.267182

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.476
ELB improved by 0.219506

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.302
ELB improved by 0.173745

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.174
ELB improved by 0.128524

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.079
ELB improved by 0.0944615

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.006
ELB improved by 0.0729288

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.949
ELB improved by 0.057742

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.904
ELB improved by 0.0447112

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.871
ELB improved by 0.0331454

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.847
ELB improved by 0.0238671

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.829
ELB improved by 0.0173273

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.816
ELB improved by 0.0131478

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.806
ELB improved by 0.0105926

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.797
ELB improved by 0.00901223

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-880.155
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-576.187
ELB improved by 303.968

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-514.101
ELB improved by 62.0861

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-473.616
ELB improved by 40.4855

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.474
ELB improved by 21.1416

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.24
ELB improved by 10.2346

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.671
ELB improved by 5.56824

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.747
ELB improved by 3.92461

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.389
ELB improved by 3.35754

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.264
ELB improved by 3.12531

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.287
ELB improved by 2.9767

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.497
ELB improved by 2.78982

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.998
ELB improved by 2.49915

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.897
ELB improved by 2.10098

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.239
ELB improved by 1.65841

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.981
ELB improved by 1.25754

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.033
ELB improved by 0.948383

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.301
ELB improved by 0.732236

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.714
ELB improved by 0.586199

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.228
ELB improved by 0.486608

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.811
ELB improved by 0.417233

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.442
ELB improved by 0.368171

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.109
ELB improved by 0.333218

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.801
ELB improved by 0.308376

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.51
ELB improved by 0.291133

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.23
ELB improved by 0.280001

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.956
ELB improved by 0.274073

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.683
ELB improved by 0.272533

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.409
ELB improved by 0.274095

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.133
ELB improved by 0.276474

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.856
ELB improved by 0.276338

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.586
ELB improved by 0.270566

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.327
ELB improved by 0.258565

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.084
ELB improved by 0.242724

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.858
ELB improved by 0.225962

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.648
ELB improved by 0.209905

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.453
ELB improved by 0.195185

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.271
ELB improved by 0.182144

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.1
ELB improved by 0.171112

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.938
ELB improved by 0.162455

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.781
ELB improved by 0.156585

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.627
ELB improved by 0.153899

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.473
ELB improved by 0.154551

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.315
ELB improved by 0.157884

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.153
ELB improved by 0.161722

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.99
ELB improved by 0.162552

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.833
ELB improved by 0.15767

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.685
ELB improved by 0.147475

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.551
ELB improved by 0.134723

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.429
ELB improved by 0.121956

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.318
ELB improved by 0.110358

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.218
ELB improved by 0.100144

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.127
ELB improved by 0.091158

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.044
ELB improved by 0.0831844

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.968
ELB improved by 0.0760394

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.898
ELB improved by 0.0695843

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.834
ELB improved by 0.063717

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.776
ELB improved by 0.0583615

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.723
ELB improved by 0.0534598

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.674
ELB improved by 0.0489661

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.629
ELB improved by 0.0448436

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.588
ELB improved by 0.0410615

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.55
ELB improved by 0.0375933

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.516
ELB improved by 0.0344156

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.484
ELB improved by 0.031507

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.455
ELB improved by 0.0288478

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.429
ELB improved by 0.0264194

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.405
ELB improved by 0.0242044

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.383
ELB improved by 0.022186

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.362
ELB improved by 0.0203483

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.343
ELB improved by 0.0186764

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.326
ELB improved by 0.017156

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.311
ELB improved by 0.0157738

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.296
ELB improved by 0.0145174

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.283
ELB improved by 0.0133751

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.27
ELB improved by 0.0123365

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.259
ELB improved by 0.0113918

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.248
ELB improved by 0.0105321

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.239
ELB improved by 0.00974951

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-859.54
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-582.755
ELB improved by 276.785

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-528.182
ELB improved by 54.5732

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-492.849
ELB improved by 35.3335

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.219
ELB improved by 18.6298

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.262
ELB improved by 9.95747

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.766
ELB improved by 6.49595

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.541
ELB improved by 5.22459

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.73
ELB improved by 4.81063

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.265
ELB improved by 4.46519

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.419
ELB improved by 3.84596

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.421
ELB improved by 2.99838

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.311
ELB improved by 2.10975

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.948
ELB improved by 1.36294

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.098
ELB improved by 0.849921

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.554
ELB improved by 0.544419

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.181
ELB improved by 0.373228

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.905
ELB improved by 0.275998

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.687
ELB improved by 0.2173

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.508
ELB improved by 0.17904

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.356
ELB improved by 0.152282

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.223
ELB improved by 0.132489

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.106
ELB improved by 0.117224

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.001
ELB improved by 0.105084

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.906
ELB improved by 0.09521

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.819
ELB improved by 0.0870411

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.739
ELB improved by 0.0801923

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.664
ELB improved by 0.0743877

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.595
ELB improved by 0.0694219

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.53
ELB improved by 0.0651382

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.468
ELB improved by 0.0614144

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.41
ELB improved by 0.0581533

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.355
ELB improved by 0.055277

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.302
ELB improved by 0.0527222

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.252
ELB improved by 0.0504372

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.203
ELB improved by 0.0483794

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.157
ELB improved by 0.0465138

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.112
ELB improved by 0.0448112

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.069
ELB improved by 0.0432479

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.027
ELB improved by 0.0418039

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.987
ELB improved by 0.0404631

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.947
ELB improved by 0.0392121

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.909
ELB improved by 0.0380401

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.872
ELB improved by 0.0369385

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.836
ELB improved by 0.0359003

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.802
ELB improved by 0.0349202

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.768
ELB improved by 0.0339941

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.734
ELB improved by 0.033119

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.702
ELB improved by 0.0322928

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.671
ELB improved by 0.0315141

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.64
ELB improved by 0.0307822

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.61
ELB improved by 0.0300969

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.58
ELB improved by 0.0294584

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.551
ELB improved by 0.0288674

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.523
ELB improved by 0.0283247

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.495
ELB improved by 0.0278317

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.468
ELB improved by 0.0273899

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.441
ELB improved by 0.0270013

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.414
ELB improved by 0.0266681

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.388
ELB improved by 0.026393

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.362
ELB improved by 0.0261793

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.336
ELB improved by 0.0260305

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.31
ELB improved by 0.0259513

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.284
ELB improved by 0.0259466

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.258
ELB improved by 0.0260227

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.231
ELB improved by 0.0261866

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.205
ELB improved by 0.0264467

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.178
ELB improved by 0.0268127

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.151
ELB improved by 0.0272959

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.123
ELB improved by 0.027909

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.094
ELB improved by 0.0286664

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.065
ELB improved by 0.0295844

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.034
ELB improved by 0.0306808

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.002
ELB improved by 0.0319747

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.969
ELB improved by 0.0334871

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.933
ELB improved by 0.0352402

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.896
ELB improved by 0.0372581

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.857
ELB improved by 0.0395671

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.814
ELB improved by 0.0421967

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.769
ELB improved by 0.0451804

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.721
ELB improved by 0.0485565

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.668
ELB improved by 0.0523687

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.612
ELB improved by 0.0566643

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.55
ELB improved by 0.0614931

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.483
ELB improved by 0.0669042

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.41
ELB improved by 0.0729419

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.331
ELB improved by 0.0796423

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.244
ELB improved by 0.0870316

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.148
ELB improved by 0.0951277

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.044
ELB improved by 0.103953

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.931
ELB improved by 0.113565

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.807
ELB improved by 0.124131

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.671
ELB improved by 0.136079

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.52
ELB improved by 0.150403

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.351
ELB improved by 0.16917

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.155
ELB improved by 0.195984

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.921
ELB improved by 0.234298

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.643
ELB improved by 0.277937

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.343
ELB improved by 0.299512

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.066
ELB improved by 0.277015

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.837
ELB improved by 0.229553

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.653
ELB improved by 0.183734

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.506
ELB improved by 0.147515

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.386
ELB improved by 0.119703

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.288
ELB improved by 0.0978588

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.208
ELB improved by 0.080192

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.142
ELB improved by 0.0656293

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.089
ELB improved by 0.053549

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.045
ELB improved by 0.043555

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.01
ELB improved by 0.035347

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.981
ELB improved by 0.0286631

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.958
ELB improved by 0.0232632

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.939
ELB improved by 0.0189284

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.923
ELB improved by 0.0154649

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.911
ELB improved by 0.0127059

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.9
ELB improved by 0.0105117

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.891
ELB improved by 0.00876755

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-885.891
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-549.289
ELB improved by 336.602

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-497.906
ELB improved by 51.3826

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-473.493
ELB improved by 24.4134

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.11
ELB improved by 9.3827

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.519
ELB improved by 4.59136

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.179
ELB improved by 3.33936

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.175
ELB improved by 3.00388

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.184
ELB improved by 2.99109

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.016
ELB improved by 3.16803

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.535
ELB improved by 3.48158

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.65
ELB improved by 3.88472

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.367
ELB improved by 4.28326

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.878
ELB improved by 4.4884

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.606
ELB improved by 4.27245

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.017
ELB improved by 3.58868

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.338
ELB improved by 2.67871

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.482
ELB improved by 1.85639

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.207
ELB improved by 1.27538

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.289
ELB improved by 0.918017

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.581
ELB improved by 0.707615

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.999
ELB improved by 0.582028

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.493
ELB improved by 0.50602

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.032
ELB improved by 0.46134

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.594
ELB improved by 0.437548

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.167
ELB improved by 0.427577

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.74
ELB improved by 0.426169

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.311
ELB improved by 0.429782

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.874
ELB improved by 0.436936

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.425
ELB improved by 0.448142

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.96
ELB improved by 0.465586

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.467
ELB improved by 0.492972

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.933
ELB improved by 0.534416

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.344
ELB improved by 0.588871

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.703
ELB improved by 0.640624

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.036
ELB improved by 0.667243

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.368
ELB improved by 0.667469

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.712
ELB improved by 0.655904

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.072
ELB improved by 0.640151

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.453
ELB improved by 0.61935

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.862
ELB improved by 0.590409

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.311
ELB improved by 0.551454

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.808
ELB improved by 0.502964

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.36
ELB improved by 0.447682

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.971
ELB improved by 0.38979

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.637
ELB improved by 0.333686

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.354
ELB improved by 0.282763

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.116
ELB improved by 0.238622

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.914
ELB improved by 0.201031

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.746
ELB improved by 0.16868

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.606
ELB improved by 0.140305

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.49
ELB improved by 0.115378

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.396
ELB improved by 0.0939264

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.32
ELB improved by 0.0760051

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.259
ELB improved by 0.0614268

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.209
ELB improved by 0.049809

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.168
ELB improved by 0.0406933

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.135
ELB improved by 0.0336288

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.106
ELB improved by 0.0282132

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.082
ELB improved by 0.0241102

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.061
ELB improved by 0.0210532

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.042
ELB improved by 0.0188411

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.025
ELB improved by 0.0173328

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.009
ELB improved by 0.0164418

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.993
ELB improved by 0.0161334

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.976
ELB improved by 0.0164271

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.959
ELB improved by 0.0174012

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.939
ELB improved by 0.0192007

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.917
ELB improved by 0.0220372

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.891
ELB improved by 0.0261582

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.86
ELB improved by 0.0317331

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.821
ELB improved by 0.0385824

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.775
ELB improved by 0.0457414

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.724
ELB improved by 0.051178

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.672
ELB improved by 0.0524271

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.623
ELB improved by 0.0483939

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.583
ELB improved by 0.0406039

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.551
ELB improved by 0.0319865

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.526
ELB improved by 0.0246335

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.507
ELB improved by 0.0191014

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.492
ELB improved by 0.0150966

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.48
ELB improved by 0.0121703

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.47
ELB improved by 0.00997753

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.192   0.186   2.367

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.049	0.005	0.054
getPIPs	0.050	0.003	0.052
graper	0.083	0.003	0.085
makeExampleData	0.009	0.002	0.011
makeExampleDataWithUnequalGroups	0.010	0.003	0.013
plotELBO	0.324	0.026	0.351
plotGroupPenalties	1.202	0.051	1.254
plotPosterior	0.739	0.009	0.747
predict.graper	2.048	0.028	2.075
print.graper	0.047	0.008	0.055