Back to Multiple platform build/check report for BioC 3.11 (small subset of software packages ONLY)

CHECK report for rhdf5 on malbec2

This page was generated on 2020-01-24 03:57:03 -0500 (Fri, 24 Jan 2020).

Package 31/41HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rhdf5 2.31.3
Mike Smith
Snapshot Date: 2020-01-24 01:50:48 -0500 (Fri, 24 Jan 2020)
URL: https://git.bioconductor.org/packages/rhdf5
Branch: master
Last Commit: 0a21f2b
Last Changed Date: 2020-01-08 18:21:50 -0500 (Wed, 08 Jan 2020)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK [ OK ]
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 

Summary

Package: rhdf5
Version: 2.31.3
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:rhdf5.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings rhdf5_2.31.3.tar.gz
StartedAt: 2020-01-24 03:35:14 -0500 (Fri, 24 Jan 2020)
EndedAt: 2020-01-24 03:43:00 -0500 (Fri, 24 Jan 2020)
EllapsedTime: 466.3 seconds
RetCode: 0
Status:  OK 
CheckDir: rhdf5.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:rhdf5.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings rhdf5_2.31.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.11-bioc-testing/meat/rhdf5.Rcheck’
* using R Under development (unstable) (2019-12-14 r77569)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘rhdf5/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rhdf5’ version ‘2.31.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rhdf5’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 15.7Mb
  sub-directories of 1Mb or more:
    libs  15.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/home/biocbuild/bbs-3.11-bioc/R/library/rhdf5/libs/rhdf5.so’:
  Found ‘abort’, possibly from ‘abort’ (C)
  Found ‘rand_r’, possibly from ‘rand_r’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
  Found ‘stdout’, possibly from ‘stdout’ (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.11-bioc-testing/meat/rhdf5.Rcheck/00check.log’
for details.

Installation output

rhdf5.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL rhdf5
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.11-bioc-testing/Rlibs’
* installing *source* package ‘rhdf5’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5.c -o H5.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5A.c -o H5A.o
H5A.c: In function ‘H5Aread_helper_INTEGER’:
H5A.c:142:10: warning: unused variable ‘herr’ [-Wunused-variable]
   herr_t herr = H5Aread(attr_id, mem_type_id, buf );
          ^~~~
H5A.c: In function ‘H5Aread_helper_FLOAT’:
H5A.c:175:10: warning: unused variable ‘herr’ [-Wunused-variable]
   herr_t herr = H5Aread(attr_id, mem_type_id, buf );
          ^~~~
H5A.c: In function ‘H5Aread_helper_STRING’:
H5A.c:202:12: warning: unused variable ‘herr’ [-Wunused-variable]
     herr_t herr = H5Aread(attr_id, mem_type_id, bufSTR );
            ^~~~
H5A.c:209:12: warning: unused variable ‘herr’ [-Wunused-variable]
     herr_t herr = H5Aread(attr_id, mem_type_id, bufSTR );
            ^~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5D.c -o H5D.o
H5D.c: In function ‘H5Dread_helper_INTEGER’:
H5D.c:150:24: warning: unused variable ‘status’ [-Wunused-variable]
                 herr_t status = H5Tinsert(mem_type_id2, cpdField[i], 0, mem_type_id);
                        ^~~~~~
H5D.c:147:20: warning: unused variable ‘status’ [-Wunused-variable]
             herr_t status = H5Tinsert(mem_type_id, cpdField[0], 0, H5T_NATIVE_INT32);
                    ^~~~~~
H5D.c:162:16: warning: unused variable ‘herr’ [-Wunused-variable]
         herr_t herr = H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, H5P_DEFAULT, buf );
                ^~~~
H5D.c:202:24: warning: unused variable ‘status’ [-Wunused-variable]
                 herr_t status = H5Tinsert(mem_type_id2, cpdField[i], 0, mem_type_id);
                        ^~~~~~
H5D.c:199:20: warning: unused variable ‘status’ [-Wunused-variable]
             herr_t status = H5Tinsert(mem_type_id, cpdField[0], 0, dtypeNative);
                    ^~~~~~
H5D.c:207:16: warning: unused variable ‘herr’ [-Wunused-variable]
         herr_t herr = H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, H5P_DEFAULT, intbuf );
                ^~~~
H5D.c: In function ‘H5Dread_helper_FLOAT’:
H5D.c:373:20: warning: unused variable ‘status’ [-Wunused-variable]
             herr_t status = H5Tinsert(mem_type_id2, cpdField[i], 0, mem_type_id);
                    ^~~~~~
H5D.c:370:16: warning: unused variable ‘status’ [-Wunused-variable]
         herr_t status = H5Tinsert(mem_type_id, cpdField[0], 0, H5T_NATIVE_DOUBLE);
                ^~~~~~
H5D.c: In function ‘H5Dread_helper_ENUM’:
H5D.c:481:20: warning: unused variable ‘status’ [-Wunused-variable]
             herr_t status = H5Tenum_insert (enumtype, st, &i);
                    ^~~~~~
H5D.c:492:24: warning: unused variable ‘status’ [-Wunused-variable]
                 herr_t status = H5Tinsert(mem_type_id2, cpdField[i], 0, mem_type_id);
                        ^~~~~~
H5D.c:489:20: warning: unused variable ‘status’ [-Wunused-variable]
             herr_t status = H5Tinsert(mem_type_id, cpdField[0], 0, enumtype);
                    ^~~~~~
H5D.c: In function ‘H5Dread_helper_ARRAY’:
H5D.c:570:24: warning: unused variable ‘status’ [-Wunused-variable]
                 herr_t status = H5Tinsert(mem_type_id2, cpdField[i], 0, mem_type_id);
                        ^~~~~~
H5D.c:567:20: warning: unused variable ‘status’ [-Wunused-variable]
             herr_t status = H5Tinsert(mem_type_id, cpdField[0], 0, arraytype);
                    ^~~~~~
H5D.c: In function ‘H5Dread_helper_COMPOUND’:
H5D.c:676:11: warning: unused variable ‘mem_type_id’ [-Wunused-variable]
     hid_t mem_type_id = -1;
           ^~~~~~~~~~~
H5D.c: In function ‘H5Dread_helper’:
H5D.c:798:12: warning: unused variable ‘status’ [-Wunused-variable]
     herr_t status = H5Tclose(dtype_id);
            ^~~~~~
H5D.c: In function ‘H5Dread_helper_INTEGER’:
H5D.c:322:59: warning: ‘intbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
                         if (((unsigned long long *)intbuf)[i] > LLONG_MAX) {
                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
H5D.c:201:38: warning: ‘dtypeNative’ may be used uninitialized in this function [-Wmaybe-uninitialized]
                 hid_t mem_type_id2 = H5Tcreate(H5T_COMPOUND, H5Tget_size(dtypeNative));
                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
H5D.c: In function ‘H5Dread_helper_ARRAY’:
H5D.c:592:16: warning: ‘buf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
         herr_t herr = H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, H5P_DEFAULT, buf );
                ^~~~
H5D.c:626:39: warning: ‘Rval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
                 INTEGER(buffer)[li] = INTEGER(Rval)[lj];
                                       ^~~~~~~~~~~~~
H5D.c:569:38: warning: ‘arraytype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
                 hid_t mem_type_id2 = H5Tcreate(H5T_COMPOUND, H5Tget_size(arraytype));
                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5E.c -o H5E.o
In file included from /home/biocbuild/bbs-3.11-bioc/R/include/R.h:86:0,
                 from H5E.h:4,
                 from H5E.c:1:
H5E.c: In function ‘custom_print_cb’:
/home/biocbuild/bbs-3.11-bioc/R/include/R_ext/Error.h:52:15: warning: label ‘Rf_error’ defined but not used [-Wunused-label]
 #define error Rf_error
               ^
H5E.c:66:5: note: in expansion of macro ‘error’
     error:
     ^~~~~
H5E.c: In function ‘custom_print_cb_compact’:
/home/biocbuild/bbs-3.11-bioc/R/include/R_ext/Error.h:52:15: warning: label ‘Rf_error’ defined but not used [-Wunused-label]
 #define error Rf_error
               ^
H5E.c:98:5: note: in expansion of macro ‘error’
     error:
     ^~~~~
H5E.c:75:15: warning: unused variable ‘indent’ [-Wunused-variable]
     const int indent = 4;
               ^~~~~~
H5E.c: In function ‘_rhdf5PrintErrorR’:
H5E.c:110:16: warning: unused variable ‘eee’ [-Wunused-variable]
         herr_t eee = H5Ewalk(estack_id_copy, H5E_WALK_DOWNWARD, &custom_print_cb, &client_data);
                ^~~
H5E.c: In function ‘_rhdf5PrintErrorRcompact’:
H5E.c:141:16: warning: unused variable ‘eee’ [-Wunused-variable]
         herr_t eee = H5Ewalk(estack_id_copy, H5E_WALK_DOWNWARD, &custom_print_cb_compact, &client_data);
                ^~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5F.c -o H5F.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5G.c -o H5G.o
H5G.c: In function ‘_H5Gget_info’:
H5G.c:68:10: warning: unused variable ‘herr’ [-Wunused-variable]
   herr_t herr = H5Gget_info( group_id, &group_info );
          ^~~~
H5G.c: In function ‘_H5Gget_info_by_name’:
H5G.c:116:10: warning: unused variable ‘herr’ [-Wunused-variable]
   herr_t herr = H5Gget_info_by_name( loc_id, group_name, &group_info, H5P_DEFAULT );
          ^~~~
H5G.c: In function ‘_H5Gget_info_by_idx’:
H5G.c:167:10: warning: unused variable ‘herr’ [-Wunused-variable]
   herr_t herr = H5Gget_info_by_idx( loc_id, group_name, index_type, order, n, &group_info, H5P_DEFAULT );
          ^~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5I.c -o H5I.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5L.c -o H5L.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5O.c -o H5O.o
H5O.c: In function ‘H5Oget_num_attrs’:
H5O.c:13:10: warning: unused variable ‘herr’ [-Wunused-variable]
   herr_t herr = H5Aiterate( obj_id, H5_INDEX_CRT_ORDER, H5_ITER_NATIVE, &idx, &opAcount, &n);
          ^~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5P.c -o H5P.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5S.c -o H5S.o
H5S.c: In function ‘_H5Sselect_cols’:
H5S.c:223:10: warning: unused variable ‘j’ [-Wunused-variable]
   int i, j;
          ^
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5T.c -o H5T.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5Z.c -o H5Z.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c H5constants.c -o H5constants.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c HandleList.cpp -o HandleList.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c HandleListWrap.c -o HandleListWrap.o
HandleListWrap.c: In function ‘_h5listOpenObjects’:
HandleListWrap.c:137:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
     herr_t status;
            ^~~~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c h5dump.c -o h5dump.o
h5dump.c: In function ‘_h5dump’:
h5dump.c:301:12: warning: unused variable ‘herr’ [-Wunused-variable]
     herr_t herr = H5Literate( loc_id, data.index_type, data.order, &idx, &opAddToLinfoTree, &data );
            ^~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c h5ls.c -o h5ls.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c h5testLock.c -o h5testLock.o
h5testLock.c: In function ‘_h5fileLock’:
h5testLock.c:9:7: warning: variable ‘lk2’ set but not used [-Wunused-but-set-variable]
   int lk2 = -1;
       ^~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c h5writeDataFrame.c -o h5writeDataFrame.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c printdatatype.c -o printdatatype.o
printdatatype.c: In function ‘getDatatypeName’:
printdatatype.c:21:16: warning: variable ‘sign_s’ set but not used [-Wunused-but-set-variable]
   const char  *sign_s=NULL;   /* sign scheme string */
                ^~~~~~
printdatatype.c:19:16: warning: variable ‘order_s’ set but not used [-Wunused-but-set-variable]
   const char  *order_s=NULL;  /* byte order string */
                ^~~~~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c utils.c -o utils.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c wrap.c -o wrap.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o rhdf5.so H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o /home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/lib/libhdf5_cpp.a /home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/lib/libhdf5.a /home/biocbuild/bbs-3.11-bioc-testing/Rlibs/Rhdf5lib/lib/libsz.a -lz -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc-testing/Rlibs/00LOCK-rhdf5/00new/rhdf5/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rhdf5)

Tests output

rhdf5.Rcheck/tests/testthat.Rout


R Under development (unstable) (2019-12-14 r77569) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(rhdf5)
> 
> test_check("rhdf5")
══ testthat results  ═══════════════════════════════════════════════════════════
[ OK: 705 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
 15.265  19.050 432.228

Example timings

rhdf5.Rcheck/rhdf5-Ex.timings

nameusersystemelapsed
H50.0020.0000.003
H5A0.0320.0000.033
H5D0.0290.0040.033
H5F0.0080.0000.008
H5G0.0060.0000.007
H5I0.0160.0000.017
H5IdComponent-class0.0010.0000.001
H5L0.0080.0000.007
H5O0.0190.0000.019
H5P0.0020.0000.002
H5P_DATASET_ACCESS0.0010.0000.001
H5P_DATASET_CREATE0.0060.0000.006
H5P_LINK_CREATE0.0040.0000.003
H5S0.0020.0000.002
H5T0.0010.0000.002
h5closeAll0.0080.0000.007
h5const0.0000.0000.001
h5createAttribute0.0140.0000.014
h5createDataset0.0530.0000.053
h5createFile0.0080.0000.008
h5createGroup0.0090.0000.009
h5errorHandling000
h5fileLocking0.0010.0000.000
h5listIdentifier0.0060.0000.006
h5ls0.0250.0030.027
h5save0.0350.0000.034
h5set_extent0.0140.0000.015
h5version0.0030.0000.003
h5write0.0430.0000.047
rhdf50.0420.0000.041