Back to "Blame Jeroen" build/check report for BioC 3.11

BUILD BIN report for multtest on tokay2

This page was generated on 2020-04-15 03:20:11 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE multtest PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 56/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
multtest 2.43.1
Katherine S. Pollard
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/multtest
Branch: master
Last Commit: 4a258ec
Last Changed Date: 2020-03-11 20:07:02 -0400 (Wed, 11 Mar 2020)
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]

Summary

Package: multtest
Version: 2.43.1
Command: rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=multtest.buildbin-libdir multtest_2.43.1.tar.gz
StartedAt: 2020-04-14 23:56:52 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 23:57:34 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 42.2 seconds
RetCode: 0
Status:  OK  
PackageFile: multtest_2.43.1.zip
PackageFileSize: 931.3 KiB

Command output

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###
### Running command:
###
###   rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=multtest.buildbin-libdir multtest_2.43.1.tar.gz
###
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install for i386

* installing *source* package 'multtest' ...
** using staged installation
** libs
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rpack.c -o Rpack.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c VScount.c -o VScount.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c block_sampling_fixed.c -o block_sampling_fixed.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bootloop.c -o bootloop.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mt.c -o mt.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pairt_sampling.c -o pairt_sampling.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c random.c -o random.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sampling.c -o sampling.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sampling_fixed.c -o sampling_fixed.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stat_func.c -o stat_func.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stat_order.c -o stat_order.o
/mingw32/bin/gcc -shared -s -static-libgcc -o multtest.dll tmp.def Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/multtest.buildbin-libdir/00LOCK-multtest/00new/multtest/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'multtest'
    finding HTML links ... done
    EBMTP-class                             html  
    EBMTP                                   html  
    Hsets                                   html  
    MTP-class                               html  
    MTP-methods                             html  
    MTP                                     html  
    boot.null                               html  
    corr.null                               html  
    fwer2gfwer                              html  
    get.index                               html  
    golub                                   html  
    meanX                                   html  
    mt.internal                             html  
    mt.maxT                                 html  
    mt.plot                                 html  
    mt.rawp2adjp                            html  
    mt.reject                               html  
    mt.sample.teststat                      html  
    mt.teststat                             html  
    ss.maxT                                 html  
    wapply                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'multtest' ...
** libs
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rpack.c -o Rpack.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c VScount.c -o VScount.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c block_sampling_fixed.c -o block_sampling_fixed.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bootloop.c -o bootloop.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mt.c -o mt.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pairt_sampling.c -o pairt_sampling.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c random.c -o random.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sampling.c -o sampling.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sampling_fixed.c -o sampling_fixed.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stat_func.c -o stat_func.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stat_order.c -o stat_order.o
/mingw64/bin/gcc -shared -s -static-libgcc -o multtest.dll tmp.def Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/multtest.buildbin-libdir/multtest/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'multtest' as multtest_2.43.1.zip
* DONE (multtest)