| Back to "Blame Jeroen" build/check report for BioC 3.11 |
This page was generated on 2020-04-15 03:20:10 -0400 (Wed, 15 Apr 2020).
| These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html) |
| TO THE DEVELOPERS/MAINTAINERS OF THE microRNA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 54/89 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| microRNA 1.45.0 "James F. Reid"
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] |
| Package: microRNA |
| Version: 1.45.0 |
| Command: rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microRNA.buildbin-libdir microRNA_1.45.0.tar.gz |
| StartedAt: 2020-04-14 23:49:51 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 23:50:18 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 27.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: microRNA_1.45.0.zip |
| PackageFileSize: 5.911 MiB |
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### Running command:
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### rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microRNA.buildbin-libdir microRNA_1.45.0.tar.gz
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install for i386
* installing *source* package 'microRNA' ...
** using staged installation
** libs
/mingw32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
if (i == len[index] - 1) { // ignore null termination character
~~^~~~~~~~~~~~~~~~~
/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o microRNA.dll tmp.def longest_common_substring.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/microRNA.buildbin-libdir/00LOCK-microRNA/00new/microRNA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'microRNA'
finding HTML links ... done
RNA2DNA html
get_selfhyb_subseq html
hsSeqs html
hsTargets html
matchSeeds html
mmSeqs html
mmTargets html
s3utr html
seedRegions html
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'microRNA' ...
** libs
/mingw64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
if (i == len[index] - 1) { // ignore null termination character
~~^~~~~~~~~~~~~~~~~
/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o microRNA.dll tmp.def longest_common_substring.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/microRNA.buildbin-libdir/microRNA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'microRNA' as microRNA_1.45.0.zip
* DONE (microRNA)