| Back to Multiple platform build/check report for BioC 3.11 (small subset of software packages ONLY) |
This page was generated on 2020-01-24 03:57:02 -0500 (Fri, 24 Jan 2020).
| Package 24/41 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| GenomicRanges 1.39.1 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | [ OK ] | OK | WARNINGS | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped |
| Package: GenomicRanges |
| Version: 1.39.1 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL GenomicRanges |
| StartedAt: 2020-01-24 02:01:11 -0500 (Fri, 24 Jan 2020) |
| EndedAt: 2020-01-24 02:01:40 -0500 (Fri, 24 Jan 2020) |
| EllapsedTime: 29.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL GenomicRanges
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc-testing/Rlibs’
* installing *source* package ‘GenomicRanges’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/IRanges/include' -I/usr/local/include -fpic -g -O2 -Wall -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/IRanges/include' -I/usr/local/include -fpic -g -O2 -Wall -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/IRanges/include' -I/usr/local/include -fpic -g -O2 -Wall -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/IRanges/include' -I/usr/local/include -fpic -g -O2 -Wall -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function ‘tlocs2rlocs’:
transcript_utils.c:143:38: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
return on_minus_strand ? end - tloc : start + tloc;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
transcript_utils.c:120:24: note: ‘end’ was declared here
int nexons, j, start, end, width;
^~~
transcript_utils.c:143:38: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
return on_minus_strand ? end - tloc : start + tloc;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
transcript_utils.c:120:17: note: ‘start’ was declared here
int nexons, j, start, end, width;
^~~~~
gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc-testing/Rlibs/00LOCK-GenomicRanges/00new/GenomicRanges/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomicRanges)