PING

This package is for version 3.21 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PING.

Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data

Bioconductor version: Release (3.21)

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xuezhang at jhsph.edu>, Raphael Gottardo <rgottard at fredhutch.org>, Sangsoon Woo <swoo at fhcrc.org>

Maintainer: Renan Sauteraud <renan.sauteraud at gmail.com>

Citation (from within R, enter citation("PING")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PING")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, Sequencing, Software, StatisticalMethod, Visualization
Version	2.51.0
In Bioconductor since	BioC 2.10 (R-2.15) (13.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	methods, PICS, graphics, grDevices, stats, Gviz, fda, BSgenome, stats4, BiocGenerics, IRanges, GenomicRanges, S4Vectors
System Requirements
URL

Suggests	parallel, ShortRead, rtracklayer
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PING_2.51.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/PING
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PING
Bioc Package Browser	https://code.bioconductor.org/browse/PING/
Package Short Url	https://bioconductor.org/packages/PING/
Package Downloads Report	Download Stats