PICS

This package is for version 3.21 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PICS.

Probabilistic inference of ChIP-seq

Bioconductor version: Release (3.21)

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <renan.sauteraud at gmail.com>

Citation (from within R, enter citation("PICS")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PICS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")

The PICS users guide	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ChIPseq, Clustering, Sequencing, Software, Visualization
Version	2.51.0
In Bioconductor since	BioC 2.6 (R-2.11) (15.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.0)
Imports	utils, stats, graphics, grDevices, methods, IRanges, GenomicRanges, Rsamtools, GenomicAlignments
System Requirements
URL	https://github.com/SRenan/PICS
Bug Reports	https://github.com/SRenan/PICS/issues

Suggests	rtracklayer, parallel, knitr
Linking To
Enhances
Depends On Me
Imports Me	PING
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PICS_2.51.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/PICS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PICS
Bioc Package Browser	https://code.bioconductor.org/browse/PICS/
Package Short Url	https://bioconductor.org/packages/PICS/
Package Downloads Report	Download Stats