To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicFiles")

In most cases, you don't need to download the package archive at all.

GenomicFiles

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see GenomicFiles.

Distributed computing by file or by range

Bioconductor version: 3.1

This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

Author: Valerie Obenchain, Michael Love, Martin Morgan

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GenomicFiles")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicFiles")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicFiles")

PDF	R Script	Introduction to GenomicFiles
PDF		Reference Manual
Text		NEWS
Video		Reading from a BAM file - Part 2

Details

biocViews	Coverage, DataImport, Genetics, Infrastructure, Sequencing, Software
Version	1.4.0
In Bioconductor since	BioC 2.14 (R-3.1) (2 years)
License	Artistic-2.0
Depends	R (>= 3.1.0), methods, BiocGenerics(>= 0.11.2), S4Vectors(>= 0.4.0), IRanges(>= 2.0.0), Rsamtools(>= 1.17.29), GenomicRanges(>= 1.19.43), rtracklayer(>= 1.25.3), BiocParallel(>= 1.1.0)
Imports	GenomicAlignments
LinkingTo
Suggests	BiocStyle, RUnit, genefilter, deepSNV, RNAseqData.HNRNPC.bam.chr14, Biostrings
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	derfinder
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GenomicFiles_1.4.0.tar.gz
Windows Binary	GenomicFiles_1.4.0.zip
Mac OS X 10.6 (Snow Leopard)	GenomicFiles_1.4.0.tgz
Mac OS X 10.9 (Mavericks)	GenomicFiles_1.4.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GenomicFiles/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/GenomicFiles/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

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Workflows for learning and use.
Course and conference material.
Videos.
Community resources and tutorials.

R / CRAN packages and documentation

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