This page was generated on 2025-11-04 15:41 -0500 (Tue, 04 Nov 2025).
BUILD results for depmap on nebbiolo2
To the developers/maintainers of the depmap package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
|
raw results
Summary
Command output
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data depmap
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* checking for file ‘depmap/DESCRIPTION’ ... OK
* preparing ‘depmap’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘depmap.Rmd’ using rmarkdown
Quitting from depmap.Rmd:104-106 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
name: EH3080
title: rnai_19Q3
reason: 1 resources failed to download
---
Backtrace:
▆
1. └─depmap::depmap_rnai()
2. └─depmap:::depmap_data_loading("rnai")
3. ├─eh[[eh_name]]
4. └─eh[[eh_name]]
5. └─ExperimentHub (local) .local(x, i, j = j, ...)
6. ├─methods::callNextMethod(...)
7. │ └─base::eval(call, callEnv)
8. │ └─base::eval(call, callEnv)
9. └─AnnotationHub (local) .nextMethod(...)
10. └─AnnotationHub (local) .local(x, i, j = j, ...)
11. └─AnnotationHub:::.Hub_get1(...)
12. └─base::tryCatch(...)
13. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. └─value[[3L]](cond)
16. └─base::tryCatch(...)
17. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
18. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
19. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'depmap.Rmd' failed with diagnostics:
failed to load resource
name: EH3080
title: rnai_19Q3
reason: 1 resources failed to download
--- failed re-building ‘depmap.Rmd’
--- re-building ‘using_depmap.Rmd’ using rmarkdown
Quitting from using_depmap.Rmd:64-75 [load_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
name: EH3086
title: metadata_19Q3
reason: 1 resources failed to download
---
Backtrace:
▆
1. ├─eh[["EH3086"]]
2. └─eh[["EH3086"]]
3. └─ExperimentHub (local) .local(x, i, j = j, ...)
4. ├─methods::callNextMethod(...)
5. │ └─base::eval(call, callEnv)
6. │ └─base::eval(call, callEnv)
7. └─AnnotationHub (local) .nextMethod(...)
8. └─AnnotationHub (local) .local(x, i, j = j, ...)
9. └─AnnotationHub:::.Hub_get1(...)
10. └─base::tryCatch(...)
11. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
12. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13. └─value[[3L]](cond)
14. └─base::tryCatch(...)
15. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'using_depmap.Rmd' failed with diagnostics:
failed to load resource
name: EH3086
title: metadata_19Q3
reason: 1 resources failed to download
--- failed re-building ‘using_depmap.Rmd’
SUMMARY: processing the following files failed:
‘depmap.Rmd’ ‘using_depmap.Rmd’
Error: Vignette re-building failed.
Execution halted