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This page was generated on 2025-11-04 15:41 -0500 (Tue, 04 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4902
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 93/435HostnameOS / ArchINSTALLBUILDCHECK
depmap 1.24.0  (landing page)
Laurent Gatto
Snapshot Date: 2025-11-04 07:30 -0500 (Tue, 04 Nov 2025)
git_url: https://git.bioconductor.org/packages/depmap
git_branch: RELEASE_3_22
git_last_commit: fbdcdfa
git_last_commit_date: 2025-10-29 10:01:43 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped


BUILD results for depmap on nebbiolo2

To the developers/maintainers of the depmap package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: depmap
Version: 1.24.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data depmap
StartedAt: 2025-11-04 11:16:18 -0500 (Tue, 04 Nov 2025)
EndedAt: 2025-11-04 11:17:43 -0500 (Tue, 04 Nov 2025)
EllapsedTime: 84.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data depmap
###
##############################################################################
##############################################################################


* checking for file ‘depmap/DESCRIPTION’ ... OK
* preparing ‘depmap’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘depmap.Rmd’ using rmarkdown

Quitting from depmap.Rmd:104-106 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH3080
  title: rnai_19Q3
  reason: 1 resources failed to download
---
Backtrace:
     ▆
  1. └─depmap::depmap_rnai()
  2.   └─depmap:::depmap_data_loading("rnai")
  3.     ├─eh[[eh_name]]
  4.     └─eh[[eh_name]]
  5.       └─ExperimentHub (local) .local(x, i, j = j, ...)
  6.         ├─methods::callNextMethod(...)
  7.         │ └─base::eval(call, callEnv)
  8.         │   └─base::eval(call, callEnv)
  9.         └─AnnotationHub (local) .nextMethod(...)
 10.           └─AnnotationHub (local) .local(x, i, j = j, ...)
 11.             └─AnnotationHub:::.Hub_get1(...)
 12.               └─base::tryCatch(...)
 13.                 └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 14.                   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 15.                     └─value[[3L]](cond)
 16.                       └─base::tryCatch(...)
 17.                         └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 18.                           └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 19.                             └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'depmap.Rmd' failed with diagnostics:
failed to load resource
  name: EH3080
  title: rnai_19Q3
  reason: 1 resources failed to download
--- failed re-building ‘depmap.Rmd’

--- re-building ‘using_depmap.Rmd’ using rmarkdown

Quitting from using_depmap.Rmd:64-75 [load_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH3086
  title: metadata_19Q3
  reason: 1 resources failed to download
---
Backtrace:
     ▆
  1. ├─eh[["EH3086"]]
  2. └─eh[["EH3086"]]
  3.   └─ExperimentHub (local) .local(x, i, j = j, ...)
  4.     ├─methods::callNextMethod(...)
  5.     │ └─base::eval(call, callEnv)
  6.     │   └─base::eval(call, callEnv)
  7.     └─AnnotationHub (local) .nextMethod(...)
  8.       └─AnnotationHub (local) .local(x, i, j = j, ...)
  9.         └─AnnotationHub:::.Hub_get1(...)
 10.           └─base::tryCatch(...)
 11.             └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 12.               └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 13.                 └─value[[3L]](cond)
 14.                   └─base::tryCatch(...)
 15.                     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 16.                       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 17.                         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'using_depmap.Rmd' failed with diagnostics:
failed to load resource
  name: EH3086
  title: metadata_19Q3
  reason: 1 resources failed to download
--- failed re-building ‘using_depmap.Rmd’

SUMMARY: processing the following files failed:
  ‘depmap.Rmd’ ‘using_depmap.Rmd’

Error: Vignette re-building failed.
Execution halted