Build/check report for BioC 3.22 experimental data - BUILD results for curatedTCGAData on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4902
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for curatedTCGAData on nebbiolo2

To the developers/maintainers of the curatedTCGAData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: curatedTCGAData

Version: 1.32.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedTCGAData

StartedAt: 2025-11-04 11:15:35 -0500 (Tue, 04 Nov 2025)

EndedAt: 2025-11-04 11:17:35 -0500 (Tue, 04 Nov 2025)

EllapsedTime: 119.9 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedTCGAData
###
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* checking for file ‘curatedTCGAData/DESCRIPTION’ ... OK
* preparing ‘curatedTCGAData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘curatedTCGAData.Rmd’ using rmarkdown

Quitting from curatedTCGAData.Rmd:130-134 [download-acc]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH4738
  title: ACC_CNVSNP-20160128
  reason: 1 resources failed to download
---
Backtrace:
     ▆
  1. └─curatedTCGAData::curatedTCGAData(...)
  2.   └─curatedTCGAData:::.getResources(...)
  3.     └─base::lapply(...)
  4.       └─curatedTCGAData (local) FUN(X[[i]], ...)
  5.         ├─query(ExperimentHub, res)[[1L]]
  6.         └─query(ExperimentHub, res)[[1L]]
  7.           └─ExperimentHub (local) .local(x, i, j = j, ...)
  8.             ├─methods::callNextMethod(...)
  9.             │ └─base::eval(call, callEnv)
 10.             │   └─base::eval(call, callEnv)
 11.             └─AnnotationHub (local) .nextMethod(...)
 12.               └─AnnotationHub (local) .local(x, i, j = j, ...)
 13.                 └─AnnotationHub:::.Hub_get1(...)
 14.                   └─base::tryCatch(...)
 15.                     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 16.                       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 17.                         └─value[[3L]](cond)
 18.                           └─base::tryCatch(...)
 19.                             └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 20.                               └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 21.                                 └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'curatedTCGAData.Rmd' failed with diagnostics:
failed to load resource
  name: EH4738
  title: ACC_CNVSNP-20160128
  reason: 1 resources failed to download
--- failed re-building ‘curatedTCGAData.Rmd’

SUMMARY: processing the following file failed:
  ‘curatedTCGAData.Rmd’

Error: Vignette re-building failed.
Execution halted