Build/check report for BioC 3.22 experimental data - BUILD results for curatedPCaData on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4902
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for curatedPCaData on nebbiolo2

To the developers/maintainers of the curatedPCaData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: curatedPCaData

Version: 1.6.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedPCaData

StartedAt: 2025-11-04 11:14:35 -0500 (Tue, 04 Nov 2025)

EndedAt: 2025-11-04 11:16:22 -0500 (Tue, 04 Nov 2025)

EllapsedTime: 106.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedPCaData
###
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* checking for file ‘curatedPCaData/DESCRIPTION’ ... OK
* preparing ‘curatedPCaData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘overview.Rmd’ using rmarkdown

Quitting from overview.Rmd:72-83 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH7915
  title: barwick_mcp_20230215
  reason: 1 resources failed to download
---
Backtrace:
     ▆
  1. ├─BiocGenerics::lapply(...)
  2. └─base::lapply(...)
  3.   └─global FUN(X[[i]], ...)
  4.     └─curatedPCaData::getPCa(id)
  5.       └─curatedPCaData:::.getResources(...)
  6.         ├─BiocGenerics::lapply(...)
  7.         └─base::lapply(...)
  8.           └─curatedPCaData (local) FUN(X[[i]], ...)
  9.             ├─AnnotationHub::query(ExperimentHub, res)[[1L]]
 10.             └─AnnotationHub::query(ExperimentHub, res)[[1L]]
 11.               └─ExperimentHub (local) .local(x, i, j = j, ...)
 12.                 ├─methods::callNextMethod(...)
 13.                 │ └─base::eval(call, callEnv)
 14.                 │   └─base::eval(call, callEnv)
 15.                 └─AnnotationHub (local) .nextMethod(...)
 16.                   └─AnnotationHub (local) .local(x, i, j = j, ...)
 17.                     └─AnnotationHub:::.Hub_get1(...)
 18.                       └─base::tryCatch(...)
 19.                         └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 20.                           └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 21.                             └─value[[3L]](cond)
 22.                               └─base::tryCatch(...)
 23.                                 └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 24.                                   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 25.                                     └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'overview.Rmd' failed with diagnostics:
failed to load resource
  name: EH7915
  title: barwick_mcp_20230215
  reason: 1 resources failed to download
--- failed re-building ‘overview.Rmd’

SUMMARY: processing the following file failed:
  ‘overview.Rmd’

Error: Vignette re-building failed.
Execution halted