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This page was generated on 2025-11-06 15:41 -0500 (Thu, 06 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4902
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 85/435HostnameOS / ArchINSTALLBUILDCHECK
curatedMetagenomicData 3.18.0  (landing page)
Lucas schiffer
Snapshot Date: 2025-11-06 07:30 -0500 (Thu, 06 Nov 2025)
git_url: https://git.bioconductor.org/packages/curatedMetagenomicData
git_branch: RELEASE_3_22
git_last_commit: 9cbaec1
git_last_commit_date: 2025-10-29 09:58:35 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for curatedMetagenomicData on nebbiolo2

To the developers/maintainers of the curatedMetagenomicData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: curatedMetagenomicData
Version: 3.18.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedMetagenomicData
StartedAt: 2025-11-06 11:12:21 -0500 (Thu, 06 Nov 2025)
EndedAt: 2025-11-06 11:14:47 -0500 (Thu, 06 Nov 2025)
EllapsedTime: 145.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedMetagenomicData
###
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* checking for file ‘curatedMetagenomicData/DESCRIPTION’ ... OK
* preparing ‘curatedMetagenomicData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘curatedMetagenomicData.Rmd’ using rmarkdown

Quitting from curatedMetagenomicData.Rmd:212-214 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `if (bfcneedsupdate(bfc, rid)) ...`:
! missing value where TRUE/FALSE needed
---
Backtrace:
    ▆
 1. └─OmicsMLRepoR::getMetadata("cMD")
 2.   └─OmicsMLRepoR:::s2p_cached_url(fpath)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'curatedMetagenomicData.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘curatedMetagenomicData.Rmd’

SUMMARY: processing the following file failed:
  ‘curatedMetagenomicData.Rmd’

Error: Vignette re-building failed.
Execution halted