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This page was generated on 2025-11-04 15:41 -0500 (Tue, 04 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4902
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 129/435HostnameOS / ArchINSTALLBUILDCHECK
FieldEffectCrc 1.20.0  (landing page)
Christopher Dampier
Snapshot Date: 2025-11-04 07:30 -0500 (Tue, 04 Nov 2025)
git_url: https://git.bioconductor.org/packages/FieldEffectCrc
git_branch: RELEASE_3_22
git_last_commit: 82f0338
git_last_commit_date: 2025-10-29 10:02:42 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for FieldEffectCrc on nebbiolo2

To the developers/maintainers of the FieldEffectCrc package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: FieldEffectCrc
Version: 1.20.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data FieldEffectCrc
StartedAt: 2025-11-04 11:18:49 -0500 (Tue, 04 Nov 2025)
EndedAt: 2025-11-04 11:19:47 -0500 (Tue, 04 Nov 2025)
EllapsedTime: 58.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data FieldEffectCrc
###
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* checking for file ‘FieldEffectCrc/DESCRIPTION’ ... OK
* preparing ‘FieldEffectCrc’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘FieldEffectCrc.Rmd’ using rmarkdown

Quitting from FieldEffectCrc.Rmd:105-107 [phenotypes]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'object' in selecting a method for function 'summary': unable to find an inherited method for function 'colData' for signature 'x = "tbl_df"'
---
Backtrace:
    ▆
 1. ├─base::summary(colData(data1)$sampType)
 2. ├─SummarizedExperiment::colData(data1)
 3. │ └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
 4. │   └─base::stop(...)
 5. └─base::.handleSimpleError(...)
 6.   └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'FieldEffectCrc.Rmd' failed with diagnostics:
error in evaluating the argument 'object' in selecting a method for function 'summary': unable to find an inherited method for function 'colData' for signature 'x = "tbl_df"'
--- failed re-building ‘FieldEffectCrc.Rmd’

SUMMARY: processing the following file failed:
  ‘FieldEffectCrc.Rmd’

Error: Vignette re-building failed.
Execution halted