Build/check report for BioC 3.22 experimental data - BUILD results for CytoMethIC on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4902
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for CytoMethIC on nebbiolo2

To the developers/maintainers of the CytoMethIC package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CytoMethIC

Version: 1.6.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CytoMethIC

StartedAt: 2025-11-04 11:15:37 -0500 (Tue, 04 Nov 2025)

EndedAt: 2025-11-04 11:17:58 -0500 (Tue, 04 Nov 2025)

EllapsedTime: 141.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CytoMethIC
###
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* checking for file ‘CytoMethIC/DESCRIPTION’ ... OK
* preparing ‘CytoMethIC’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CytoMethIC.Rmd’ using rmarkdown

Quitting from CytoMethIC.Rmd:86-89 [cyto6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `cmi_predict()`:
! Model not supported by package.
---
Backtrace:
    ▆
 1. └─CytoMethIC::cmi_predict(betasHM450, model)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CytoMethIC.Rmd' failed with diagnostics:
Model not supported by package.
--- failed re-building ‘CytoMethIC.Rmd’

--- re-building ‘Oncology.Rmd’ using rmarkdown

Quitting from Oncology.Rmd:68-71 [cyto7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH8423
  title: Random Forest Model for Cell of Origin Prediction
  reason: 1 resources failed to download
---
Backtrace:
     ▆
  1. ├─ExperimentHub()[["EH8423"]]
  2. └─ExperimentHub()[["EH8423"]]
  3.   └─ExperimentHub (local) .local(x, i, j = j, ...)
  4.     ├─methods::callNextMethod(...)
  5.     │ └─base::eval(call, callEnv)
  6.     │   └─base::eval(call, callEnv)
  7.     └─AnnotationHub (local) .nextMethod(...)
  8.       └─AnnotationHub (local) .local(x, i, j = j, ...)
  9.         └─AnnotationHub:::.Hub_get1(...)
 10.           └─base::tryCatch(...)
 11.             └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 12.               └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 13.                 └─value[[3L]](cond)
 14.                   └─base::tryCatch(...)
 15.                     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 16.                       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 17.                         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Oncology.Rmd' failed with diagnostics:
failed to load resource
  name: EH8423
  title: Random Forest Model for Cell of Origin Prediction
  reason: 1 resources failed to download
--- failed re-building ‘Oncology.Rmd’

SUMMARY: processing the following files failed:
  ‘CytoMethIC.Rmd’ ‘Oncology.Rmd’

Error: Vignette re-building failed.
Execution halted