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This page was generated on 2025-12-21 08:30 -0500 (Sun, 21 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| biocgpu | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 295 |
| amarone | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 296 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 3/3 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| scviR 1.10.0 (landing page) Vincent Carey
| biocgpu | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | NA | NA | ||||||||
| amarone | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
|
To the developers/maintainers of the scviR package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: scviR |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scviR |
| StartedAt: 2025-12-21 11:50:38 -0000 (Sun, 21 Dec 2025) |
| EndedAt: 2025-12-21 11:51:31 -0000 (Sun, 21 Dec 2025) |
| EllapsedTime: 53.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scviR
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* checking for file ‘scviR/DESCRIPTION’ ... OK
* preparing ‘scviR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘citeseq_tut.Rmd’ using rmarkdown
--- finished re-building ‘citeseq_tut.Rmd’
--- re-building ‘compch12.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/Rtmpa6Sqmk/Rbuild1feb12e2651/scviR/vignettes/compch12_files/figure-html/lkkey-1.png" but not available.
The magick package is required to crop "/tmp/Rtmpa6Sqmk/Rbuild1feb12e2651/scviR/vignettes/compch12_files/figure-html/lkadt-1.png" but not available.
The magick package is required to crop "/tmp/Rtmpa6Sqmk/Rbuild1feb12e2651/scviR/vignettes/compch12_files/figure-html/dosubcl-1.png" but not available.
The magick package is required to crop "/tmp/Rtmpa6Sqmk/Rbuild1feb12e2651/scviR/vignettes/compch12_files/figure-html/lkgra-1.png" but not available.
The magick package is required to crop "/tmp/Rtmpa6Sqmk/Rbuild1feb12e2651/scviR/vignettes/compch12_files/figure-html/lktotumap-1.png" but not available.
The magick package is required to crop "/tmp/Rtmpa6Sqmk/Rbuild1feb12e2651/scviR/vignettes/compch12_files/figure-html/domattot-1.png" but not available.
The magick package is required to crop "/tmp/Rtmpa6Sqmk/Rbuild1feb12e2651/scviR/vignettes/compch12_files/figure-html/lkconc-1.png" but not available.
The magick package is required to crop "/tmp/Rtmpa6Sqmk/Rbuild1feb12e2651/scviR/vignettes/compch12_files/figure-html/lksubsss-1.png" but not available.
The magick package is required to crop "/tmp/Rtmpa6Sqmk/Rbuild1feb12e2651/scviR/vignettes/compch12_files/figure-html/lkgradvi-1.png" but not available.
--- finished re-building ‘compch12.Rmd’
--- re-building ‘new_citeseq.Rmd’ using rmarkdown
Quitting from new_citeseq.Rmd:41-48 [doe44]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `py_module_import()`:
! ImportError: Numba needs NumPy 2.3 or less. Got NumPy 2.4.
Run `reticulate::py_last_error()` for details.
---
Backtrace:
▆
1. └─scviR::muonR()
2. └─reticulate::import("muon")
3. └─reticulate:::py_module_import(module, convert = convert)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'new_citeseq.Rmd' failed with diagnostics:
ImportError: Numba needs NumPy 2.3 or less. Got NumPy 2.4.
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘new_citeseq.Rmd’
--- re-building ‘scviR.Rmd’ using rmarkdown
--- finished re-building ‘scviR.Rmd’
SUMMARY: processing the following file failed:
‘new_citeseq.Rmd’
Error: Vignette re-building failed.
Execution halted