| Back to Build/check report for BioC 3.22: simplified long |
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This page was generated on 2026-03-23 11:58 -0400 (Mon, 23 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4893 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2326/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| vsclust 1.12.0 (landing page) Veit Schwammle
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for vsclust in R Universe. | ||||||||||||||
|
To the developers/maintainers of the vsclust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/vsclust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: vsclust |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 vsclust |
| StartedAt: 2026-03-22 20:47:37 -0400 (Sun, 22 Mar 2026) |
| EndedAt: 2026-03-22 20:51:04 -0400 (Sun, 22 Mar 2026) |
| EllapsedTime: 206.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 vsclust
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* checking for file ‘vsclust/DESCRIPTION’ ... OK
* preparing ‘vsclust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Integrate_With_Bioconductor_Objects.Rmd’ using rmarkdown
--- finished re-building ‘Integrate_With_Bioconductor_Objects.Rmd’
--- re-building ‘Run_VSClust_Workflow.Rmd’ using rmarkdown
Quitting from Run_VSClust_Workflow.Rmd:284-298 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! No result. IDs might not be matching or you do not have any significant enrichments
---
Backtrace:
▆
1. └─vsclust::runFuncEnrich(VSClust_cl, infosource = "KEGG")
2. └─shiny::validate(need(!is.null(x), "No result. IDs might not be matching or you do not have any significant enrichments"))
3. └─shiny:::reactiveStop(...)
4. └─shiny:::stopWithCondition(c("shiny.silent.error", class), message)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Run_VSClust_Workflow.Rmd' failed with diagnostics:
No result. IDs might not be matching or you do not have any significant enrichments
--- failed re-building ‘Run_VSClust_Workflow.Rmd’
SUMMARY: processing the following file failed:
‘Run_VSClust_Workflow.Rmd’
Error: Vignette re-building failed.
Execution halted