Britta Velten
| Snapshot Date: 2026-03-22 13:45 -0400 (Sun, 22 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_22 |
| git_last_commit: 76fc31b |
| git_last_commit_date: 2025-10-29 10:49:21 -0400 (Wed, 29 Oct 2025) |
| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-03-23 11:57 -0400 (Mon, 23 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4893 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 922/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.26.0 (landing page) Britta Velten
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| See other builds for graper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.26.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings graper_1.26.0.tar.gz |
| StartedAt: 2026-03-23 00:06:52 -0400 (Mon, 23 Mar 2026) |
| EndedAt: 2026-03-23 00:08:23 -0400 (Mon, 23 Mar 2026) |
| EllapsedTime: 91.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings graper_1.26.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.26.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... INFO
installed size is 6.1Mb
sub-directories of 1Mb or more:
libs 6.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.26.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c fit_graper.cpp -o fit_graper.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.22-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.22-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.22-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.22-bioc/R/site-library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-892.827
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-596.244
ELB improved by 296.583
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-529.603
ELB improved by 66.6405
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-489.945
ELB improved by 39.6586
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.495
ELB improved by 15.4494
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.738
ELB improved by 6.75697
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.153
ELB improved by 4.585
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.06
ELB improved by 4.09383
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.009
ELB improved by 4.05032
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.94
ELB improved by 4.06887
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.027
ELB improved by 3.91358
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.576
ELB improved by 3.45111
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.83
ELB improved by 2.74576
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.826
ELB improved by 2.00433
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.431
ELB improved by 1.39481
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.459
ELB improved by 0.971745
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.753
ELB improved by 0.705855
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.212
ELB improved by 0.541188
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.778
ELB improved by 0.433935
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.419
ELB improved by 0.358868
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.116
ELB improved by 0.302924
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.857
ELB improved by 0.25934
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.632
ELB improved by 0.224417
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.437
ELB improved by 0.195959
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.264
ELB improved by 0.172538
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.111
ELB improved by 0.153141
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.974
ELB improved by 0.137009
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.85
ELB improved by 0.123551
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.738
ELB improved by 0.112305
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.635
ELB improved by 0.102904
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.54
ELB improved by 0.0950593
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.451
ELB improved by 0.0885432
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.368
ELB improved by 0.0831786
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.289
ELB improved by 0.0788285
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.214
ELB improved by 0.0753901
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.141
ELB improved by 0.0727909
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.07
ELB improved by 0.0709862
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432
ELB improved by 0.0699603
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.931
ELB improved by 0.0697296
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.86
ELB improved by 0.0703496
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.788
ELB improved by 0.0719273
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.714
ELB improved by 0.07464
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.635
ELB improved by 0.078765
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.55
ELB improved by 0.0847216
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.457
ELB improved by 0.0931262
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.352
ELB improved by 0.104848
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.231
ELB improved by 0.121021
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.088
ELB improved by 0.142909
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.917
ELB improved by 0.171473
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.71
ELB improved by 0.206671
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.463
ELB improved by 0.24711
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.172
ELB improved by 0.291012
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.834
ELB improved by 0.338163
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.443
ELB improved by 0.390977
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.989
ELB improved by 0.453786
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.46
ELB improved by 0.529098
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.851
ELB improved by 0.609052
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.177
ELB improved by 0.673679
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.467
ELB improved by 0.709929
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.748
ELB improved by 0.719791
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.041
ELB improved by 0.706337
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.372
ELB improved by 0.66972
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.76
ELB improved by 0.611582
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.223
ELB improved by 0.537372
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.767
ELB improved by 0.455537
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.392
ELB improved by 0.375098
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.089
ELB improved by 0.303268
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.844
ELB improved by 0.244203
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.645
ELB improved by 0.199087
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.478
ELB improved by 0.166992
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.333
ELB improved by 0.145795
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.2
ELB improved by 0.132743
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.075
ELB improved by 0.124718
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.957
ELB improved by 0.118584
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.845
ELB improved by 0.11188
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.741
ELB improved by 0.103614
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.647
ELB improved by 0.0943638
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.561
ELB improved by 0.085474
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.483
ELB improved by 0.0781338
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.41
ELB improved by 0.0730805
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.339
ELB improved by 0.0707581
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.268
ELB improved by 0.0714109
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.193
ELB improved by 0.074821
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.113
ELB improved by 0.079681
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.03
ELB improved by 0.083094
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.949
ELB improved by 0.081468
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.876
ELB improved by 0.0732222
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.815
ELB improved by 0.0604515
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.768
ELB improved by 0.0470104
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.732
ELB improved by 0.0356143
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.705
ELB improved by 0.0270569
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.684
ELB improved by 0.0209928
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.668
ELB improved by 0.0167636
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.654
ELB improved by 0.0137863
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.642
ELB improved by 0.011644
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.632
ELB improved by 0.0100623
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.623
ELB improved by 0.00886531
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-849.325
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-538.915
ELB improved by 310.41
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-483.548
ELB improved by 55.3672
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.17
ELB improved by 28.3773
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.3
ELB improved by 10.8706
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.305
ELB improved by 4.99464
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.976
ELB improved by 3.32875
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.267
ELB improved by 2.70906
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.885
ELB improved by 2.38221
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.744
ELB improved by 2.14083
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.821
ELB improved by 1.92319
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.109
ELB improved by 1.71208
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.602
ELB improved by 1.50671
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.29
ELB improved by 1.31227
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.155
ELB improved by 1.13465
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.177
ELB improved by 0.977859
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.334
ELB improved by 0.843432
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.603
ELB improved by 0.73069
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.966
ELB improved by 0.637412
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.406
ELB improved by 0.560405
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.91
ELB improved by 0.495945
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.469
ELB improved by 0.440203
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.08
ELB improved by 0.389786
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.737
ELB improved by 0.342374
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.44
ELB improved by 0.297139
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.185
ELB improved by 0.25463
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.969
ELB improved by 0.216081
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.787
ELB improved by 0.18259
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.632
ELB improved by 0.154614
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.5
ELB improved by 0.131911
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.386
ELB improved by 0.113783
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.287
ELB improved by 0.0993594
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.199
ELB improved by 0.087809
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.121
ELB improved by 0.0784424
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.05
ELB improved by 0.0707335
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.986
ELB improved by 0.0643002
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.927
ELB improved by 0.0588714
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.873
ELB improved by 0.0542538
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.822
ELB improved by 0.0503065
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.775
ELB improved by 0.0469222
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.731
ELB improved by 0.0440155
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.69
ELB improved by 0.0415167
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.651
ELB improved by 0.0393671
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.613
ELB improved by 0.0375174
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.577
ELB improved by 0.0359258
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.543
ELB improved by 0.034557
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.509
ELB improved by 0.0333814
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.477
ELB improved by 0.0323739
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.445
ELB improved by 0.0315136
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.415
ELB improved by 0.0307824
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.384
ELB improved by 0.0301651
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.355
ELB improved by 0.0296483
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.325
ELB improved by 0.0292203
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.297
ELB improved by 0.0288707
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.268
ELB improved by 0.02859
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.24
ELB improved by 0.0283696
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.211
ELB improved by 0.0282013
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.183
ELB improved by 0.0280774
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.155
ELB improved by 0.0279905
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.127
ELB improved by 0.0279335
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.1
ELB improved by 0.0278994
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.072
ELB improved by 0.0278815
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.044
ELB improved by 0.0278732
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.016
ELB improved by 0.027868
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.988
ELB improved by 0.0278596
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.96
ELB improved by 0.0278422
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.932
ELB improved by 0.0278102
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.905
ELB improved by 0.0277582
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.877
ELB improved by 0.0276816
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.849
ELB improved by 0.0275764
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.822
ELB improved by 0.027439
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.795
ELB improved by 0.0272668
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.768
ELB improved by 0.0270581
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.741
ELB improved by 0.0268119
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.714
ELB improved by 0.0265284
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.688
ELB improved by 0.0262085
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.662
ELB improved by 0.0258543
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.637
ELB improved by 0.0254685
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.612
ELB improved by 0.0250548
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.587
ELB improved by 0.0246176
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.563
ELB improved by 0.0241616
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.539
ELB improved by 0.0236921
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.516
ELB improved by 0.0232146
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.493
ELB improved by 0.0227347
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.471
ELB improved by 0.0222577
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.449
ELB improved by 0.021789
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.428
ELB improved by 0.0213333
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.407
ELB improved by 0.0208951
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.387
ELB improved by 0.0204783
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.366
ELB improved by 0.0200862
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.347
ELB improved by 0.0197217
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.327
ELB improved by 0.0193869
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.308
ELB improved by 0.0190835
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.289
ELB improved by 0.0188129
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.271
ELB improved by 0.018576
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.252
ELB improved by 0.0183732
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.234
ELB improved by 0.0182048
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.216
ELB improved by 0.018071
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.198
ELB improved by 0.0179716
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.18
ELB improved by 0.0179066
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.162
ELB improved by 0.0178759
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.145
ELB improved by 0.0178795
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.127
ELB improved by 0.0179174
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.109
ELB improved by 0.0179899
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.091
ELB improved by 0.0180974
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.072
ELB improved by 0.0182407
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.054
ELB improved by 0.0184207
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.035
ELB improved by 0.018639
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.016
ELB improved by 0.0188973
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.997
ELB improved by 0.0191981
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.978
ELB improved by 0.0195443
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.958
ELB improved by 0.0199398
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.937
ELB improved by 0.0203892
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.916
ELB improved by 0.0208982
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.895
ELB improved by 0.0214743
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.873
ELB improved by 0.0221263
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.85
ELB improved by 0.0228656
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.826
ELB improved by 0.0237066
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.802
ELB improved by 0.0246675
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.776
ELB improved by 0.025772
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.749
ELB improved by 0.0270512
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.72
ELB improved by 0.0285464
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.69
ELB improved by 0.0303135
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.657
ELB improved by 0.0324293
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.622
ELB improved by 0.0350016
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.584
ELB improved by 0.0381835
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.542
ELB improved by 0.0421958
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.495
ELB improved by 0.0473579
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.441
ELB improved by 0.0541284
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.377
ELB improved by 0.0631407
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.302
ELB improved by 0.0751911
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.211
ELB improved by 0.0910665
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.1
ELB improved by 0.111047
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.966
ELB improved by 0.134102
iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.809
ELB improved by 0.157478
iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.631
ELB improved by 0.177813
iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.438
ELB improved by 0.193143
iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.234
ELB improved by 0.203246
iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.026
ELB improved by 0.208262
iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.818
ELB improved by 0.208106
iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.615
ELB improved by 0.203281
iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.419
ELB improved by 0.195541
iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.231
ELB improved by 0.187747
iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.048
ELB improved by 0.18354
iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.86
ELB improved by 0.187419
iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.656
ELB improved by 0.204548
iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.419
ELB improved by 0.23692
iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.145
ELB improved by 0.273501
iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.853
ELB improved by 0.292313
iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.563
ELB improved by 0.290263
iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.274
ELB improved by 0.288536
iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.971
ELB improved by 0.303177
iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.642
ELB improved by 0.329044
iteration 154
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.298
ELB improved by 0.34366
iteration 155
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.964
ELB improved by 0.334165
iteration 156
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.65
ELB improved by 0.314332
iteration 157
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.357
ELB improved by 0.293109
iteration 158
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.092
ELB improved by 0.265208
iteration 159
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.856
ELB improved by 0.235342
iteration 160
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.653
ELB improved by 0.203663
iteration 161
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.492
ELB improved by 0.160384
iteration 162
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.382
ELB improved by 0.110264
iteration 163
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.314
ELB improved by 0.0681484
iteration 164
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.274
ELB improved by 0.0402395
iteration 165
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.25
ELB improved by 0.024142
iteration 166
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.234
ELB improved by 0.0155276
iteration 167
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.223
ELB improved by 0.0110841
iteration 168
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.214
ELB improved by 0.00883189
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-867.005
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-569.574
ELB improved by 297.431
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-510.746
ELB improved by 58.8272
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-475.072
ELB improved by 35.6745
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.948
ELB improved by 16.1236
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.705
ELB improved by 8.24331
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.95
ELB improved by 5.75457
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.778
ELB improved by 5.17264
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.487
ELB improved by 5.29121
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.969
ELB improved by 5.51761
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.693
ELB improved by 5.2755
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.42
ELB improved by 4.27343
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.442
ELB improved by 2.97757
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.514
ELB improved by 1.9288
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.251
ELB improved by 1.26255
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.375
ELB improved by 0.876097
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.723
ELB improved by 0.652132
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.206
ELB improved by 0.516337
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.777
ELB improved by 0.429052
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.407
ELB improved by 0.370014
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.079
ELB improved by 0.328072
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.784
ELB improved by 0.295771
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.516
ELB improved by 0.267525
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.276
ELB improved by 0.240301
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.062
ELB improved by 0.214228
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.871
ELB improved by 0.190948
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.699
ELB improved by 0.171423
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.544
ELB improved by 0.15544
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.401
ELB improved by 0.142245
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.27
ELB improved by 0.131104
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.149
ELB improved by 0.121477
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.036
ELB improved by 0.113008
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.93
ELB improved by 0.105467
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.832
ELB improved by 0.0986995
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.739
ELB improved by 0.0926021
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.652
ELB improved by 0.0870995
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.57
ELB improved by 0.0821355
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.492
ELB improved by 0.0776663
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.419
ELB improved by 0.0736562
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.348
ELB improved by 0.0700751
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.282
ELB improved by 0.0668965
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.217
ELB improved by 0.0640967
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.156
ELB improved by 0.0616544
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.096
ELB improved by 0.0595497
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.039
ELB improved by 0.0577648
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.982
ELB improved by 0.0562833
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.927
ELB improved by 0.0550908
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.873
ELB improved by 0.0541741
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.819
ELB improved by 0.0535221
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.766
ELB improved by 0.0531252
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.713
ELB improved by 0.0529751
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.66
ELB improved by 0.0530651
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.607
ELB improved by 0.0533897
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.553
ELB improved by 0.0539442
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.498
ELB improved by 0.0547247
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.442
ELB improved by 0.0557273
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.386
ELB improved by 0.0569482
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.327
ELB improved by 0.0583827
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.267
ELB improved by 0.060025
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.205
ELB improved by 0.0618673
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.141
ELB improved by 0.0638992
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.075
ELB improved by 0.0661071
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.007
ELB improved by 0.0684731
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.936
ELB improved by 0.0709747
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.862
ELB improved by 0.0735836
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.786
ELB improved by 0.0762655
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.707
ELB improved by 0.0789794
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.625
ELB improved by 0.0816777
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.541
ELB improved by 0.0843054
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.454
ELB improved by 0.0868012
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.365
ELB improved by 0.0890974
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.274
ELB improved by 0.0911209
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.181
ELB improved by 0.0927943
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.087
ELB improved by 0.0940375
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.992
ELB improved by 0.0947697
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.897
ELB improved by 0.0949133
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.803
ELB improved by 0.0943984
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.71
ELB improved by 0.0931694
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.619
ELB improved by 0.0911926
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.53
ELB improved by 0.0884645
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.445
ELB improved by 0.085018
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.364
ELB improved by 0.0809249
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.288
ELB improved by 0.0762934
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.217
ELB improved by 0.071259
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.151
ELB improved by 0.0659728
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.09
ELB improved by 0.0605863
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.035
ELB improved by 0.0552396
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.985
ELB improved by 0.0500515
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.94
ELB improved by 0.0451147
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.899
ELB improved by 0.0404944
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.863
ELB improved by 0.0362306
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.831
ELB improved by 0.0323415
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.802
ELB improved by 0.028828
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.776
ELB improved by 0.0256786
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.753
ELB improved by 0.0228729
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.733
ELB improved by 0.0203854
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.715
ELB improved by 0.0181879
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.699
ELB improved by 0.0162517
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.684
ELB improved by 0.0145485
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.671
ELB improved by 0.0130518
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.659
ELB improved by 0.0117368
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.649
ELB improved by 0.0105812
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.639
ELB improved by 0.00956494
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-860.44
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-572.938
ELB improved by 287.502
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-510.941
ELB improved by 61.9968
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-470.662
ELB improved by 40.2791
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.367
ELB improved by 16.2948
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.701
ELB improved by 6.66664
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.017
ELB improved by 3.68341
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.352
ELB improved by 2.66469
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.067
ELB improved by 2.28577
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.957
ELB improved by 2.10971
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.961
ELB improved by 1.99645
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.053
ELB improved by 1.9075
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.221
ELB improved by 1.83153
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.463
ELB improved by 1.75829
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.793
ELB improved by 1.67065
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.247
ELB improved by 1.54602
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.879
ELB improved by 1.3677
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.738
ELB improved by 1.14063
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.843
ELB improved by 0.895122
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.173
ELB improved by 0.66962
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.684
ELB improved by 0.489006
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.326
ELB improved by 0.35798
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.058
ELB improved by 0.268335
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.85
ELB improved by 0.208352
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.682
ELB improved by 0.167944
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.542
ELB improved by 0.139974
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.422
ELB improved by 0.119847
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.317
ELB improved by 0.10474
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.224
ELB improved by 0.0929437
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.141
ELB improved by 0.0834213
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.065
ELB improved by 0.0755305
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.997
ELB improved by 0.0688602
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.933
ELB improved by 0.0631372
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.875
ELB improved by 0.0581713
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.821
ELB improved by 0.0538248
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.771
ELB improved by 0.049994
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.725
ELB improved by 0.0465986
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.681
ELB improved by 0.0435746
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.64
ELB improved by 0.0408701
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.602
ELB improved by 0.0384423
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.566
ELB improved by 0.0362556
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.531
ELB improved by 0.0342799
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.499
ELB improved by 0.0324897
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.468
ELB improved by 0.0308632
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.439
ELB improved by 0.0293817
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.411
ELB improved by 0.0280289
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.384
ELB improved by 0.0267908
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.358
ELB improved by 0.0256552
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.334
ELB improved by 0.0246114
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.31
ELB improved by 0.02365
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.287
ELB improved by 0.0227628
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.265
ELB improved by 0.0219425
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.244
ELB improved by 0.0211829
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.224
ELB improved by 0.0204784
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.204
ELB improved by 0.0198239
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.184
ELB improved by 0.0192152
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.166
ELB improved by 0.0186483
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.148
ELB improved by 0.01812
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.13
ELB improved by 0.0176272
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.113
ELB improved by 0.0171672
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.096
ELB improved by 0.0167378
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.08
ELB improved by 0.016337
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.064
ELB improved by 0.0159629
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.048
ELB improved by 0.015614
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.033
ELB improved by 0.0152891
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.018
ELB improved by 0.0149868
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.003
ELB improved by 0.0147063
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.989
ELB improved by 0.0144468
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.975
ELB improved by 0.0142075
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.961
ELB improved by 0.0139879
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.947
ELB improved by 0.0137876
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.933
ELB improved by 0.0136063
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.92
ELB improved by 0.0134439
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.907
ELB improved by 0.0133004
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.893
ELB improved by 0.0131758
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.88
ELB improved by 0.0130704
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.867
ELB improved by 0.0129846
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.854
ELB improved by 0.0129189
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.841
ELB improved by 0.0128742
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.829
ELB improved by 0.0128513
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.816
ELB improved by 0.0128514
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.803
ELB improved by 0.012876
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.79
ELB improved by 0.0129269
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.777
ELB improved by 0.0130063
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.764
ELB improved by 0.0131168
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.751
ELB improved by 0.0132617
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.737
ELB improved by 0.0134448
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.723
ELB improved by 0.0136708
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.71
ELB improved by 0.0139457
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.695
ELB improved by 0.0142766
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.681
ELB improved by 0.0146723
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.665
ELB improved by 0.0151437
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.65
ELB improved by 0.0157047
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.633
ELB improved by 0.0163725
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.616
ELB improved by 0.0171689
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.598
ELB improved by 0.018122
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.579
ELB improved by 0.0192676
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.558
ELB improved by 0.020652
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.536
ELB improved by 0.0223351
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.511
ELB improved by 0.0243943
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.485
ELB improved by 0.0269293
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.454
ELB improved by 0.0300663
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.42
ELB improved by 0.0339616
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.382
ELB improved by 0.0387985
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.337
ELB improved by 0.0447741
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.285
ELB improved by 0.0520655
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.224
ELB improved by 0.0607686
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.153
ELB improved by 0.0708178
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.071
ELB improved by 0.0819251
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.978
ELB improved by 0.0936042
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.872
ELB improved by 0.105326
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.756
ELB improved by 0.116742
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.628
ELB improved by 0.127821
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.489
ELB improved by 0.138808
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.339
ELB improved by 0.150043
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.177
ELB improved by 0.161698
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.004
ELB improved by 0.173425
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.82
ELB improved by 0.183957
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.629
ELB improved by 0.191054
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.436
ELB improved by 0.192368
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.25
ELB improved by 0.18698
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.073
ELB improved by 0.176026
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.912
ELB improved by 0.161669
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.766
ELB improved by 0.145769
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.637
ELB improved by 0.129479
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.523
ELB improved by 0.113505
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.425
ELB improved by 0.0983592
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.34
ELB improved by 0.0844368
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.268
ELB improved by 0.0719957
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.207
ELB improved by 0.0611425
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.155
ELB improved by 0.0518489
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.111
ELB improved by 0.0439902
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.074
ELB improved by 0.0373898
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.042
ELB improved by 0.0318565
iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.015
ELB improved by 0.0272104
iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.992
ELB improved by 0.0232966
iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.972
ELB improved by 0.0199892
iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.954
ELB improved by 0.0171887
iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.94
ELB improved by 0.0148169
iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.927
ELB improved by 0.0128103
iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.916
ELB improved by 0.011116
iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.906
ELB improved by 0.00968827
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.356 0.184 2.529
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.051 | 0.003 | 0.054 | |
| getPIPs | 0.047 | 0.013 | 0.060 | |
| graper | 0.078 | 0.008 | 0.086 | |
| makeExampleData | 0.010 | 0.001 | 0.011 | |
| makeExampleDataWithUnequalGroups | 0.012 | 0.001 | 0.013 | |
| plotELBO | 0.327 | 0.026 | 0.354 | |
| plotGroupPenalties | 1.086 | 0.058 | 1.144 | |
| plotPosterior | 0.713 | 0.013 | 0.726 | |
| predict.graper | 2.039 | 0.021 | 2.061 | |
| print.graper | 0.050 | 0.005 | 0.055 | |