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This page was generated on 2026-01-01 11:58 -0500 (Thu, 01 Jan 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4883
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4671
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 721/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fastreeR 2.0.0  (landing page)
Anestis Gkanogiannis
Snapshot Date: 2025-12-29 13:45 -0500 (Mon, 29 Dec 2025)
git_url: https://git.bioconductor.org/packages/fastreeR
git_branch: RELEASE_3_22
git_last_commit: 04a52eb
git_last_commit_date: 2025-10-29 11:15:37 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for fastreeR on taishan

To the developers/maintainers of the fastreeR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fastreeR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: fastreeR
Version: 2.0.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data fastreeR
StartedAt: 2025-12-30 02:04:17 -0000 (Tue, 30 Dec 2025)
EndedAt: 2025-12-30 02:06:48 -0000 (Tue, 30 Dec 2025)
EllapsedTime: 151.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data fastreeR
###
##############################################################################
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* checking for file ‘fastreeR/DESCRIPTION’ ... OK
* preparing ‘fastreeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fastreeR_vignette.Rmd’ using rmarkdown
VCF2ISTATS
Num of Ind = 150
VCF2DIST
150 0
VCF2TREE
VCF2TREE

Quitting from fastreeR_vignette.Rmd:306-333 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `get()`:
! object 'ggtree' not found
---
Backtrace:
    ▆
 1. ├─base::print(p)
 2. └─ggtree:::print.ggtree(p)
 3.   └─ggtree:::is_ggtree_interactive()
 4.     └─yulab.utils::get_cache_item("ggtree")
 5.       └─base::get(item, envir = env, inherits = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'fastreeR_vignette.Rmd' failed with diagnostics:
object 'ggtree' not found
--- failed re-building ‘fastreeR_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘fastreeR_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted