| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-12-08 12:00 -0500 (Mon, 08 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4879 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4668 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4669 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 481/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| crumblr 1.2.0 (landing page) Gabriel Hoffman
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the crumblr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/crumblr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: crumblr |
| Version: 1.2.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 crumblr |
| StartedAt: 2025-12-04 17:20:27 -0500 (Thu, 04 Dec 2025) |
| EndedAt: 2025-12-04 17:21:45 -0500 (Thu, 04 Dec 2025) |
| EllapsedTime: 78.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 crumblr
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* checking for file ‘crumblr/DESCRIPTION’ ... OK
* preparing ‘crumblr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘crumblr.Rmd’ using rmarkdown
Quitting from crumblr.Rmd:88-99 [vp]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.fitExtractVarPartModel()`:
! Initial model failed:
the 'findbars' function has moved to the reformulas package. Please update your imports, or ask an upstream package maintainter to do so.
---
Backtrace:
▆
1. ├─variancePartition::fitExtractVarPartModel(cobj, form, info)
2. └─variancePartition::fitExtractVarPartModel(cobj, form, info)
3. └─variancePartition:::.fitExtractVarPartModel(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'crumblr.Rmd' failed with diagnostics:
Initial model failed:
the 'findbars' function has moved to the reformulas package. Please update your imports, or ask an upstream package maintainter to do so.
--- failed re-building ‘crumblr.Rmd’
--- re-building ‘crumblr_theory.Rmd’ using rmarkdown
--- finished re-building ‘crumblr_theory.Rmd’
--- re-building ‘integration.Rmd’ using rmarkdown
--- finished re-building ‘integration.Rmd’
SUMMARY: processing the following file failed:
‘crumblr.Rmd’
Error: Vignette re-building failed.
Execution halted