Thomas Girke
| Snapshot Date: 2026-05-07 13:40 -0400 (Thu, 07 May 2026) |
| git_url: https://git.bioconductor.org/packages/bioassayR |
| git_branch: RELEASE_3_23 |
| git_last_commit: b239b42 |
| git_last_commit_date: 2026-04-28 08:38:14 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-08 11:34 -0400 (Fri, 08 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4992 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4725 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 183/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bioassayR 1.50.0 (landing page) Thomas Girke
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for bioassayR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the bioassayR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bioassayR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: bioassayR |
| Version: 1.50.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bioassayR |
| StartedAt: 2026-05-07 15:42:39 -0400 (Thu, 07 May 2026) |
| EndedAt: 2026-05-07 15:42:45 -0400 (Thu, 07 May 2026) |
| EllapsedTime: 6.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bioassayR
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* checking for file ‘bioassayR/DESCRIPTION’ ... OK
* preparing ‘bioassayR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘bioassayR.Rmd’ using rmarkdown
Error: processing vignette 'bioassayR.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘bioassayR.Rmd’
#"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(knitr); knit2html('bioassayR.Rmd',options=c('toc',markdown::markdownHTMLOptions(TRUE)))"
#"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(knitr); knit('bioassayR.Rmd')"
#pandoc --self-contained --output bioassayR.html -H header.html --from markdown --smart --table-of-contents --template html.template bioassayR.md;
#"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(knitrBootstrap); knit_bootstrap('bioassayR.Rmd',show_code=TRUE)"
"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(rmarkdown); library(BiocStyle); rmarkdown::render('bioassayR.Rmd')"
Attaching package: ‘BiocStyle’
The following objects are masked from ‘package:rmarkdown’:
html_document, md_document, pdf_document
Error in strsplit(info, "\n", useBytes = TRUE)[[1]] :
subscript out of bounds
Calls: <Anonymous> ... pandoc_available -> find_pandoc -> lapply -> FUN -> get_pandoc_version
Execution halted
make: *** [all] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) :
running 'make' failed
Execution halted