| Back to Build/check report for BioC 3.22: simplified long |
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This page was generated on 2026-01-29 11:58 -0500 (Thu, 29 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4886 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1001/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HoloFoodR 1.4.0 (landing page) Tuomas Borman
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
|
To the developers/maintainers of the HoloFoodR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HoloFoodR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HoloFoodR |
| Version: 1.4.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 HoloFoodR |
| StartedAt: 2026-01-26 18:17:53 -0500 (Mon, 26 Jan 2026) |
| EndedAt: 2026-01-26 18:29:26 -0500 (Mon, 26 Jan 2026) |
| EllapsedTime: 692.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 HoloFoodR
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* checking for file ‘HoloFoodR/DESCRIPTION’ ... OK
* preparing ‘HoloFoodR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HoloFoodR.Rmd’ using rmarkdown
Quitting from HoloFoodR.Rmd:143-148 [get_mae]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `split.default()`:
! first argument must be a vector
---
Backtrace:
▆
1. └─HoloFoodR::getResult(sample_ids)
2. └─HoloFoodR:::.construct_MAE(animal_data, ...)
3. ├─base::split(sample_tab, f)
4. └─base::split.default(sample_tab, f)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'HoloFoodR.Rmd' failed with diagnostics:
first argument must be a vector
--- failed re-building ‘HoloFoodR.Rmd’
SUMMARY: processing the following file failed:
‘HoloFoodR.Rmd’
Error: Vignette re-building failed.
Execution halted