Multiple platform build/check report for BioC 3.22 - BUILD results for HPiP on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4883
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4671
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for HPiP on nebbiolo2

To the developers/maintainers of the HPiP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: HPiP

Version: 1.16.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 HPiP

StartedAt: 2025-12-25 18:17:50 -0500 (Thu, 25 Dec 2025)

EndedAt: 2025-12-25 18:27:21 -0500 (Thu, 25 Dec 2025)

EllapsedTime: 571.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 HPiP
###
##############################################################################
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* checking for file ‘HPiP/DESCRIPTION’ ... OK
* preparing ‘HPiP’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HPiP_tutorial.Rmd’ using rmarkdown

Quitting from HPiP_tutorial.Rmd:1123-1133 [unnamed-chunk-57]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `annotation_custom()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error in `UseMethod()`:
! no applicable method for 'rescale' applied to an object of class "c('simpleUnit', 'unit', 'unit_v2')"
---
Backtrace:
     ▆
  1. └─HPiP::pred_ensembel(...)
  2.   ├─base::print(plot_list[[i]])
  3.   └─ggplot2 (local) `print.ggplot2::ggplot`(plot_list[[i]])
  4.     ├─ggplot2::ggplot_gtable(data)
  5.     └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
  6.       └─ggplot2:::by_layer(...)
  7.         ├─rlang::try_fetch(...)
  8.         │ ├─base::tryCatch(...)
  9.         │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 10.         │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 11.         │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 12.         │ └─base::withCallingHandlers(...)
 13.         └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 14.           └─l$draw_geom(d, layout)
 15.             └─ggplot2 (local) draw_geom(..., self = self)
 16.               └─self$geom$draw_layer(...)
 17.                 └─ggplot2 (local) draw_layer(..., self = self)
 18.                   └─base::lapply(...)
 19.                     └─ggplot2 (local) FUN(X[[i]], ...)
 20.                       ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
 21.                       └─self$draw_panel(...)
 22.                         └─ggplot2 (local) draw_panel(...)
 23.                           └─ggplot2:::ranges_annotation(...)
 24.                             └─coord$transform(data, panel_params)
 25.                               └─ggplot2 (local) transform(...)
 26.                                 └─ggplot2::transform_position(data, x, y)
 27.                                   └─base::lapply(df[scales == "x"], trans_x, ...)
 28.                                     └─ggplot2 (local) FUN(X[[i]], ...)
 29.                                       └─ggplot2 (local) rescale(..., self = self)
 30.                                         └─self$scale$rescale(x, self$limits, self$continuous_range)
 31.                                           └─ggplot2 (local) rescale(..., self = self)
 32.                                             └─self$rescaler(x, from = range)
 33.                                               └─scales (local) rescaler(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'HPiP_tutorial.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error in `UseMethod()`:
! no applicable method for 'rescale' applied to an object of class "c('simpleUnit', 'unit', 'unit_v2')"
--- failed re-building ‘HPiP_tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘HPiP_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted