Back to Multiple platform build/check report for BioC 3.23:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2026-05-08 11:34 -0400 (Fri, 08 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4992
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-04-24 r89963) -- "Because it was There" 4725
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 401/2418HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ClustIRR 1.10.0  (landing page)
Simo Kitanovski
Snapshot Date: 2026-05-07 13:40 -0400 (Thu, 07 May 2026)
git_url: https://git.bioconductor.org/packages/ClustIRR
git_branch: RELEASE_3_23
git_last_commit: 0634e77
git_last_commit_date: 2026-04-28 09:01:37 -0400 (Tue, 28 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for ClustIRR in R Universe.

BUILD results for ClustIRR on kjohnson3

To the developers/maintainers of the ClustIRR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ClustIRR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ClustIRR
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ClustIRR
StartedAt: 2026-05-07 15:47:24 -0400 (Thu, 07 May 2026)
EndedAt: 2026-05-07 15:48:16 -0400 (Thu, 07 May 2026)
EllapsedTime: 52.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ClustIRR
###
##############################################################################
##############################################################################


* checking for file ‘ClustIRR/DESCRIPTION’ ... OK
* preparing ‘ClustIRR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘User_manual_groups.Rmd’ using rmarkdown
Error: processing vignette 'User_manual_groups.Rmd' failed with diagnostics:
subscript out of bounds
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
--- failed re-building ‘User_manual_groups.Rmd’

--- re-building ‘User_manual_introduction.Rmd’ using rmarkdown
Error: processing vignette 'User_manual_introduction.Rmd' failed with diagnostics:
subscript out of bounds
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
Error in eval(x, envir = envir) : object 'run' not found
--- failed re-building ‘User_manual_introduction.Rmd’

SUMMARY: processing the following files failed:
  ‘User_manual_groups.Rmd’ ‘User_manual_introduction.Rmd’

Error: Vignette re-building failed.
Execution halted