Back to Workflows build report for BioC 3.23

This page was generated on 2025-12-09 16:30 -0500 (Tue, 09 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4869
lconwaymacOS 12.7.6 Montereyx86_64R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" 4618
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 7/28HostnameOS / ArchINSTALLBUILD
cytofWorkflow 1.35.0  (landing page)
Mark D. Robinson
Snapshot Date: 2025-12-09 12:45 -0500 (Tue, 09 Dec 2025)
git_url: https://git.bioconductor.org/packages/cytofWorkflow
git_branch: devel
git_last_commit: 020485a
git_last_commit_date: 2025-10-29 09:46:33 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK  

BUILD results for cytofWorkflow on nebbiolo1

To the developers/maintainers of the cytofWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: cytofWorkflow
Version: 1.35.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cytofWorkflow
StartedAt: 2025-12-09 13:04:54 -0500 (Tue, 09 Dec 2025)
EndedAt: 2025-12-09 13:06:08 -0500 (Tue, 09 Dec 2025)
EllapsedTime: 74.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cytofWorkflow
###
##############################################################################
##############################################################################


* checking for file ‘cytofWorkflow/DESCRIPTION’ ... OK
* preparing ‘cytofWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘cytofWorkflow.Rmd’ using rmarkdown
trying URL 'https://zenodo.org/records/10039274/files/PBMC8_metadata.xlsx'

Quitting from cytofWorkflow.Rmd:188-195 [load-metadata]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://zenodo.org/records/10039274/files/PBMC8_metadata.xlsx'
---
Backtrace:
    ▆
 1. └─utils::download.file(file.path(url, md), destfile = md, mode = "wb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'cytofWorkflow.Rmd' failed with diagnostics:
cannot open URL 'https://zenodo.org/records/10039274/files/PBMC8_metadata.xlsx'
--- failed re-building ‘cytofWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘cytofWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted