Build/check report for BioC 3.23 experimental data - BUILD results for furrowSeg on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"	4852
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for furrowSeg on nebbiolo1

To the developers/maintainers of the furrowSeg package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: furrowSeg

Version: 1.39.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data furrowSeg

StartedAt: 2026-02-05 11:19:18 -0500 (Thu, 05 Feb 2026)

EndedAt: 2026-02-05 11:23:09 -0500 (Thu, 05 Feb 2026)

EllapsedTime: 231.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data furrowSeg
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* checking for file ‘furrowSeg/DESCRIPTION’ ... OK
* preparing ‘furrowSeg’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘exampleFurrowSegmentation.Rnw’ using knitr
--- finished re-building ‘exampleFurrowSegmentation.Rnw’

--- re-building ‘genPaperFigures.Rnw’ using knitr

Quitting from genPaperFigures.Rnw:54-78 [identifyFurrowPosition]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `as.tbl()` was deprecated in dplyr 1.0.0 and is now defunct.
i Please use `tibble::as_tibble()` instead.
---
Backtrace:
     x
  1. +-tabWT %>% group_by(sample) %>% filter(t == tstar) %>% ...
  2. +-dplyr::do(., fnPos(., plotSamples = ""))
  3. +-dplyr:::do.grouped_df(., fnPos(., plotSamples = ""))
  4. | \-rlang::eval_tidy(args[[j]], mask)
  5. \-global fnPos(., plotSamples = "")
  6.   \-furrowSeg::identifyFurrowPosition(...)
  7.     \-furrowSeg:::averageFeature(x, w, "x.0.s.area", w = w)
  8.       \-dplyr::as.tbl(x)
  9.         \-lifecycle::deprecate_stop("1.0.0", "as.tbl()", "tibble::as_tibble()")
 10.           \-lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'genPaperFigures.Rnw' failed with diagnostics:
`as.tbl()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `tibble::as_tibble()` instead.
--- failed re-building ‘genPaperFigures.Rnw’

SUMMARY: processing the following file failed:
  ‘genPaperFigures.Rnw’

Error: Vignette re-building failed.
Execution halted