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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:CoSIAdata.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings CoSIAdata_1.9.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/CoSIAdata.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘CoSIAdata/DESCRIPTION’ ... OK
* this is package ‘CoSIAdata’ version ‘1.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CoSIAdata’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘CoSIAdata-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CoSIAdata
> ### Title: CoSIAdata: VST normalized RNA-Sequencing data with annotations
> ###   for multiple species samples from Bgee
> ### Aliases: CoSIAdata _PACKAGE
> ### Keywords: internal
> 
> ### ** Examples
> 
> library(ExperimentHub)
> eh <- ExperimentHub()
> query(eh, "CoSIAdata")
ExperimentHub with 6 records
# snapshotDate(): 2025-07-17
# $dataprovider: Bgee
# $species: Rattus norvegicus, Mus musculus, Homo sapiens, Drosophila melano...
# $rdataclass: data.frame
# additional mcols(): taxonomyid, genome, description,
#   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
#   rdatapath, sourceurl, sourcetype 
# retrieve records with, e.g., 'object[["EH7858"]]' 

           title                                                              
  EH7858 | VST normalized RNA-Sequencing data with annotations for 362,533,...
  EH7859 | VST normalized RNA-Sequencing data with annotations for 31,405,6...
  EH7860 | VST normalized RNA-Sequencing data with annotations for 3,814,42...
  EH7861 | VST normalized RNA-Sequencing data with annotations for 5,235,72...
  EH7862 | VST normalized RNA-Sequencing data with annotations for 4,576,39...
  EH7863 | VST normalized RNA-Sequencing data with annotations for 1,923,06...
> eh[["EH7863"]]
see ?CoSIAdata and browseVignettes('CoSIAdata') for documentation
loading from cache
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘celegans_data’
Error loading resource.
 attempting to re-download
downloading 1 resources
retrieving 1 resource

loading from cache
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘celegans_data’
Error: failed to load resource
  name: EH7863
  title: VST normalized RNA-Sequencing data with annotations for 1,923,064 Caenorhabditis elegans samples from Bgee
  reason: C stack usage  7971092 is too close to the limit
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.22-data-experiment/meat/CoSIAdata.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL CoSIAdata
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* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘CoSIAdata’ ...
** this is package ‘CoSIAdata’ version ‘1.9.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CoSIAdata)