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### Running command:
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###   /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('sesame_1.31.0.tar.gz','quit-with-status'=TRUE)"
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── Installing sesame ───────────────────────────────────────────────────────────
✔ Package installed successfully
── sesame session metadata ─────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpTHdT4f/file1c7c3724b54403/sesame
→ BiocVersion: 3.24
→ Package: sesame
→ PackageVersion: 1.31.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/meat/sesame.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpTHdT4f/file1c7c3724b54403/sesame
→ installDir: /tmp/RtmpTHdT4f/file1c7c373ec951a8
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on sesame ─────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 4.5.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (36%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of sesame...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 6 times)
  • suppressWarnings() in R/deidentify.R (line 28, column 12)
  • ...
  • suppressWarnings() in R/sesameAnno.R (line 102, column 5)
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 8
functions greater than 50 lines.
  The longest 5 functions are:
    • readIDAT_nonenc() (R/readIDAT.R): 252 lines
    • ...
    • visualizeSegments() (R/cnv.R): 55 lines
* Checking man page documentation...
ℹ NOTE: Consider adding runnable examples to man pages that document exported
objects.
  • mLiftOver.Rd
  • ...
  • sesameAnno_readManifestTSV.Rd
ℹ NOTE: Usage of dontrun / donttest tags found in man page examples. 10% of man
pages use at least one of these tags.
  Found in files:
    • bisConversionControl.Rd
    • ...
    • visualizeSegments.Rd
ℹ NOTE: Use donttest instead of dontrun.
  Found in files:
    • bisConversionControl.Rd
    • ...
    • visualizeSegments.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 7 lines (0%) are > 80 characters long.
  First few lines:
    • R/cnv.R#L4 sdfs.normal[c("GM12878_206909630 ...
    • ...
    • vignettes/inferences.Rmd#L45 <!-- Ethnicity is inferred using a rando ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 14 lines (0%) are not.
  First few lines:
    • R/sex.R#L36 hypoMALE <- c( ...
    • ...
    • vignettes/QC.Rmd#L131 influence of signal background. ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 0 WARNINGS | ℹ 9 NOTES
ℹ See the sesame.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.