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This page was generated on 2026-05-08 14:45 -0400 (Fri, 08 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 (2026-04-24) -- "Because it was There" 916
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Package 194/229HostnameOS / ArchINSTALLBUILDCHECKBIOCCHECK
scrapper 1.7.0  (landing page)
Aaron Lun
Snapshot Date: 2026-05-08 12:00 -0400 (Fri, 08 May 2026)
git_url: https://git.bioconductor.org/packages/scrapper
git_branch: devel
git_last_commit: 8005249
git_last_commit_date: 2026-04-28 09:03:42 -0400 (Tue, 28 Apr 2026)
teran2Linux (Ubuntu 24.04.4 LTS) / x86_64  ERROR    ERROR  skippedskipped

BUILD results for scrapper on teran2

To the developers/maintainers of the scrapper package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: scrapper
Version: 1.7.0
Command: /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data scrapper
StartedAt: 2026-05-08 12:43:41 -0400 (Fri, 08 May 2026)
EndedAt: 2026-05-08 12:44:12 -0400 (Fri, 08 May 2026)
EllapsedTime: 31.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data scrapper
###
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* checking for file ‘scrapper/DESCRIPTION’ ... OK
* preparing ‘scrapper’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘scrapper’ ...
** this is package ‘scrapper’ version ‘1.7.0’
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
using C++17
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.24-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rigraphlib/igraph/include/igraph' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/BiocNeighbors/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rigraphlib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.24-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rigraphlib/igraph/include/igraph' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/BiocNeighbors/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rigraphlib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c adt_quality_control.cpp -o adt_quality_control.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.24-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rigraphlib/igraph/include/igraph' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/BiocNeighbors/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rigraphlib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c aggregate_across_cells.cpp -o aggregate_across_cells.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.24-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rigraphlib/igraph/include/igraph' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/BiocNeighbors/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rigraphlib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c aggregate_across_genes.cpp -o aggregate_across_genes.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.24-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rigraphlib/igraph/include/igraph' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/BiocNeighbors/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rigraphlib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c build_snn_graph.cpp -o build_snn_graph.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.24-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rigraphlib/igraph/include/igraph' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/BiocNeighbors/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/Rigraphlib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c center_size_factors.cpp -o center_size_factors.o
center_size_factors.cpp: In function ‘Rcpp::NumericVector center_size_factors(Rcpp::NumericVector, Rcpp::Nullable<Rcpp::Vector<13> >, bool)’:
center_size_factors.cpp:17:9: error: ‘struct scran_norm::CenterSizeFactorsOptions’ has no member named ‘block_mode’
   17 |     opt.block_mode = (lowest ? scran_norm::CenterBlockMode::LOWEST : scran_norm::CenterBlockMode::PER_BLOCK);
      |         ^~~~~~~~~~
center_size_factors.cpp:26:48: error: no matching function for call to ‘center_size_factors_blocked(long unsigned int, double*, const int*&, NULL, scran_norm::CenterSizeFactorsOptions&)’
   26 |         scran_norm::center_size_factors_blocked(sanisizer::cast<std::size_t>(ncells), static_cast<double*>(output.begin()), ptr, NULL, opt);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/assorthead/include/scran_norm/scran_norm.hpp:4,
                 from center_size_factors.cpp:6:
/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/assorthead/include/scran_norm/center_size_factors.hpp:294:26: note: candidate: ‘template<class SizeFactor_, class Block_> std::vector<T> scran_norm::center_size_factors_blocked(std::size_t, SizeFactor_*, const Block_*, const CenterSizeFactorsBlockedOptions&)’
  294 | std::vector<SizeFactor_> center_size_factors_blocked(
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/assorthead/include/scran_norm/center_size_factors.hpp:294:26: note:   template argument deduction/substitution failed:
center_size_factors.cpp:26:48: note:   candidate expects 4 arguments, 5 provided
   26 |         scran_norm::center_size_factors_blocked(sanisizer::cast<std::size_t>(ncells), static_cast<double*>(output.begin()), ptr, NULL, opt);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
center_size_factors.cpp:28:40: error: no matching function for call to ‘center_size_factors(long unsigned int, double*, NULL, scran_norm::CenterSizeFactorsOptions&)’
   28 |         scran_norm::center_size_factors(sanisizer::cast<std::size_t>(output.size()), static_cast<double*>(output.begin()), NULL, opt);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/assorthead/include/scran_norm/center_size_factors.hpp:194:13: note: candidate: ‘template<class SizeFactor_> SizeFactor_ scran_norm::center_size_factors(std::size_t, SizeFactor_*, const CenterSizeFactorsOptions&)’
  194 | SizeFactor_ center_size_factors(const std::size_t num, SizeFactor_* const size_factors, const CenterSizeFactorsOptions& options) {
      |             ^~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/R/site-library/assorthead/include/scran_norm/center_size_factors.hpp:194:13: note:   template argument deduction/substitution failed:
center_size_factors.cpp:28:40: note:   candidate expects 3 arguments, 4 provided
   28 |         scran_norm::center_size_factors(sanisizer::cast<std::size_t>(output.size()), static_cast<double*>(output.begin()), NULL, opt);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make: *** [/home/rapidbuild/bbs-3.24-bioc-rapid/R/etc/Makeconf:197: center_size_factors.o] Error 1
ERROR: compilation failed for package ‘scrapper’
* removing ‘/tmp/Rtmpn50g4R/Rinst1518565e99030f/scrapper’
      -----------------------------------
ERROR: package installation failed