Rapid builds (Linux only) of a subset of BioC 3.23<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences"	925
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BUILD results for ncdfFlow on teran2

To the developers/maintainers of the ncdfFlow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ncdfFlow

Version: 2.57.0

Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ncdfFlow

StartedAt: 2025-12-09 12:43:36 -0500 (Tue, 09 Dec 2025)

EndedAt: 2025-12-09 12:43:40 -0500 (Tue, 09 Dec 2025)

EllapsedTime: 4.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ncdfFlow
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* checking for file ‘ncdfFlow/DESCRIPTION’ ... OK
* preparing ‘ncdfFlow’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘ncdfFlow’ ...
** this is package ‘ncdfFlow’ version ‘2.57.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using C++11
g++ -std=gnu++11 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/cpp11/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/BH/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/Rhdf5lib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c cpp11.cpp -o cpp11.o
g++ -std=gnu++11 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/cpp11/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/BH/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/Rhdf5lib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c hdfFlow.cpp -o hdfFlow.o
hdfFlow.cpp: In function ‘void readSlice_cpp(hid_t, hid_t, hid_t, std::vector<int>, int, int, double*, bool)’:
hdfFlow.cpp:508:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  508 |                 if(sampleIndx >= nSample)
      |                    ~~~~~~~~~~~^~~~~~~~~~
hdfFlow.cpp:493:21: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  493 |         herr_t      status;
      |                     ^~~~~~
mkdir -p "/tmp/RtmpoTSo1e/Rinst2053063fd37df4/00LOCK-ncdfFlow/00new/ncdfFlow/lib"
ar rs "/tmp/RtmpoTSo1e/Rinst2053063fd37df4/00LOCK-ncdfFlow/00new/ncdfFlow/lib/libncdfFlow.a" cpp11.o hdfFlow.o
ar: creating /tmp/RtmpoTSo1e/Rinst2053063fd37df4/00LOCK-ncdfFlow/00new/ncdfFlow/lib/libncdfFlow.a
g++ -std=gnu++11 -shared -L/usr/local/lib -o ncdfFlow.so cpp11.o hdfFlow.o /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/Rhdf5lib/lib/libhdf5_cpp.a /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/Rhdf5lib/lib/libhdf5.a -L/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/Rhdf5lib/lib -lcrypto -lcurl -lsz -laec -lz -ldl -lm
installing to /tmp/RtmpoTSo1e/Rinst2053063fd37df4/00LOCK-ncdfFlow/00new/ncdfFlow/libs
** R
Warning in dir.create(outCodeDir) :
  cannot create dir '/tmp/RtmpoTSo1e/Rinst2053063fd37df4/00LOCK-ncdfFlow/00new/ncdfFlow/R', reason 'No space left on device'
Error in .install_package_code_files(".", instdir) : 
  cannot open directory '/tmp/RtmpoTSo1e/Rinst2053063fd37df4/00LOCK-ncdfFlow/00new/ncdfFlow/R'
ERROR: unable to collate and parse R files for package ‘ncdfFlow’
* removing ‘/tmp/RtmpoTSo1e/Rinst2053063fd37df4/ncdfFlow’
      -----------------------------------
ERROR: package installation failed