| Back to Rapid builds (Linux only) of a subset of BioC 3.24 Report updated every 4 hours |
This page was generated on 2026-05-09 14:36 -0400 (Sat, 09 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 (2026-04-24) -- "Because it was There" | 917 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 141/229 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BIOCCHECK | |||||||
| minet 3.71.0 (landing page) Patrick E. Meyer
| teran2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | ERRORS | |||||||
|
To the developers/maintainers of the minet package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: minet |
| Version: 3.71.0 |
| Command: /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('minet_3.71.0.tar.gz','quit-with-status'=TRUE)" |
| StartedAt: 2026-05-09 14:24:49 -0400 (Sat, 09 May 2026) |
| EndedAt: 2026-05-09 14:24:59 -0400 (Sat, 09 May 2026) |
| EllapsedTime: 10.4 seconds |
| RetCode: 1 |
| Status: ERRORS |
| CheckDir: None |
| Warnings: NA |
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### Running command:
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### /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('minet_3.71.0.tar.gz','quit-with-status'=TRUE)"
###
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── Installing minet ────────────────────────────────────────────────────────────
✔ Package installed successfully
── minet session metadata ──────────────────────────────────────────────────────
→ sourceDir: /tmp/Rtmpo0Tb1D/file2ced505948b837/minet
→ BiocVersion: 3.24
→ Package: minet
→ PackageVersion: 3.71.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/meat/minet.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/Rtmpo0Tb1D/file2ced505948b837/minet
→ installDir: /tmp/Rtmpo0Tb1D/file2ced502310d4c2
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on minet ──────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
No vignettes found.
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: 'Date:' field format is not 'YYYY-MM-DD': 2014-07
ℹ NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
! WARNING: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
✖ ERROR: No 'vignettes' directory.
* Checking package installation calls in R code...
* Checking for library/require of minet...
* Checking coding practice...
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
Found in files:
• R/build.mim.R (line 24, column 27)
• ...
• R/vis.res.R (line 73, column 35)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* Checking man page documentation...
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 103 lines (13%) are > 80 characters long.
First few lines:
• R/build.mim.R#L4 #a package that implements various algor ...
• ...
• man/vis.res.Rd#L65 minet: A R/Bioconductor Package for Inf ...
ℹ NOTE: Consider 4 spaces instead of tabs; 97 lines (12%) contain tabs.
First few lines:
• R/build.mim.R#L13 if( disc == "equalfreq" || disc == "equ ...
• ...
• man/vis.res.Rd#L58 \item "f-beta-score" \eqn{F_\beta = (1+ ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 276 lines (34%) are
not.
First few lines:
• R/build.mim.R#L32 stop("unknown estimator") ...
• ...
• man/vis.res.Rd#L66 2008. ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 2 ERRORS | ⚠ 1 WARNINGS | ℹ 10 NOTES
ℹ See the minet.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.