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### Running command:
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###   /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('biocthis_1.23.0.tar.gz','quit-with-status'=TRUE)"
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── Installing biocthis ─────────────────────────────────────────────────────────
✔ Package installed successfully
── biocthis session metadata ───────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpcVkQkT/file2c0f9b8955549/biocthis
→ BiocVersion: 3.24
→ Package: biocthis
→ PackageVersion: 1.23.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/meat/biocthis.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpcVkQkT/file2c0f9b8955549/biocthis
→ installDir: /tmp/RtmpcVkQkT/file2c0f9b718fd9e2
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on biocthis ───────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
! WARNING: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of biocthis...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid '<<-' if possible (found 1 times)
  • <<- in R/use_bioc_github_action.R (line 206, column 28)
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There is 1
function greater than 50 lines.
  The longest 5 functions are:
    • use_bioc_github_action() (R/use_bioc_github_action.R): 116 lines
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/bioc_badges.Rd
ℹ NOTE: Consider adding runnable examples to man pages that document exported
objects.
  • bioc_badges.Rd
  • use_tinytest.Rd
ℹ NOTE: Usage of dontrun / donttest tags found in man page examples. 88% of man
pages use at least one of these tags.
  Found in files:
    • bioc_badges.Rd
    • ...
    • use_bioc_vignette.Rd
ℹ NOTE: Use donttest instead of dontrun.
  Found in files:
    • bioc_badges.Rd
    • ...
    • use_bioc_vignette.Rd
* Checking package NEWS...
ℹ NOTE: More than one NEWS file found.See ?news for recognition ordering.
  Please remove one of the following:
    • templates/NEWS.md
    • biocthis/NEWS.md
! WARNING: news(package='biocthis') failed with news file:
templates/NEWS.md:news() failed to parse news file:
templates/NEWS.mdbiocthis/NEWS.md Refer to
https://contributions.bioconductor.org/news.html to be included in Bioconductor
release announcements.WARNING: news(package='biocthis') failed with news file:
biocthis/NEWS.md:news() failed to parse news file:
templates/NEWS.mdbiocthis/NEWS.md Refer to
https://contributions.bioconductor.org/news.html to be included in Bioconductor
release announcements.
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 137 lines (8%) are > 80 characters long.
  First few lines:
    • R/bioc_style.R#L37 #' styler::style_dir(usethis::proj_path( ...
    • ...
    • vignettes/biocthis.Rmd#L423 ```{r vignetteBiblio, results = "asis", ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 18 lines (1%) are not.
  First few lines:
    • vignettes/biocthis.Rmd#L141 - Helps you install R packages needed ...
    • ...
    • vignettes/biocthis.Rmd#L161 ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 3 WARNINGS | ℹ 10 NOTES
ℹ See the biocthis.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.