| Back to Rapid builds (Linux only) of a subset of BioC 3.24 Report updated every 4 hours |
This page was generated on 2026-05-09 14:36 -0400 (Sat, 09 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 (2026-04-24) -- "Because it was There" | 917 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 10/229 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BIOCCHECK | |||||||
| alabaster.se 1.13.0 (landing page) Aaron Lun
| teran2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | ERRORS | |||||||
|
To the developers/maintainers of the alabaster.se package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: alabaster.se |
| Version: 1.13.0 |
| Command: /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('alabaster.se_1.13.0.tar.gz','quit-with-status'=TRUE)" |
| StartedAt: 2026-05-09 14:17:26 -0400 (Sat, 09 May 2026) |
| EndedAt: 2026-05-09 14:18:06 -0400 (Sat, 09 May 2026) |
| EllapsedTime: 40.1 seconds |
| RetCode: 1 |
| Status: ERRORS |
| CheckDir: None |
| Warnings: NA |
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### Running command:
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### /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('alabaster.se_1.13.0.tar.gz','quit-with-status'=TRUE)"
###
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── Installing alabaster.se ─────────────────────────────────────────────────────
✔ Package installed successfully
── alabaster.se session metadata ───────────────────────────────────────────────
→ sourceDir: /tmp/RtmpoCjuiE/file2beef457bcdd0d/alabaster.se
→ BiocVersion: 3.24
→ Package: alabaster.se
→ PackageVersion: 1.13.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/meat/alabaster.se.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpoCjuiE/file2beef457bcdd0d/alabaster.se
→ installDir: /tmp/RtmpoCjuiE/file2beef431279832
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on alabaster.se ───────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews: Sequencing,
Coverage
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (80%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
Found in files:
• userguide.Rmd
* Checking package installation calls in R code...
* Checking for library/require of alabaster.se...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There is 1
function greater than 50 lines.
The longest 5 functions are:
• _anonymous_.47() (R/saveSummarizedExperiment.R): 64 lines
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 70 lines (11%) are > 80 characters long.
First few lines:
• R/emptyRowRanges.R#L3 #' Check the \code{\link{rowRanges}} of ...
• ...
• vignettes/userguide.Rmd#L29 Given a `(Ranged)SummarizedExperiment`, ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 0 WARNINGS | ℹ 8 NOTES
ℹ See the alabaster.se.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.