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This page was generated on 2026-05-08 14:45 -0400 (Fri, 08 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 (2026-04-24) -- "Because it was There" 916
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Package 202/229HostnameOS / ArchINSTALLBUILDCHECKBIOCCHECK
SingleR 2.15.0  (landing page)
Aaron Lun
Snapshot Date: 2026-05-08 12:00 -0400 (Fri, 08 May 2026)
git_url: https://git.bioconductor.org/packages/SingleR
git_branch: devel
git_last_commit: d03b8f0
git_last_commit_date: 2026-04-28 08:50:50 -0400 (Tue, 28 Apr 2026)
teran2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skippedskipped

BUILD results for SingleR on teran2

To the developers/maintainers of the SingleR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SingleR
Version: 2.15.0
Command: /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data SingleR
StartedAt: 2026-05-08 12:45:14 -0400 (Fri, 08 May 2026)
EndedAt: 2026-05-08 12:46:33 -0400 (Fri, 08 May 2026)
EllapsedTime: 78.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data SingleR
###
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* checking for file ‘SingleR/DESCRIPTION’ ... OK
* preparing ‘SingleR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘SingleR.Rmd’ using rmarkdown

Quitting from SingleR.Rmd:95-105 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'scrapper'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SingleR.Rmd' failed with diagnostics:
there is no package called 'scrapper'
--- failed re-building ‘SingleR.Rmd’

SUMMARY: processing the following file failed:
  ‘SingleR.Rmd’

Error: Vignette re-building failed.
Execution halted