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### Running command:
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###   /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('HubPub_1.21.0.tar.gz','quit-with-status'=TRUE)"
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── Installing HubPub ───────────────────────────────────────────────────────────
✔ Package installed successfully
── HubPub session metadata ─────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmppdkqSw/file1b2d506090bf7f/HubPub
→ BiocVersion: 3.24
→ Package: HubPub
→ PackageVersion: 1.21.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/meat/HubPub.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmppdkqSw/file1b2d506090bf7f/HubPub
→ installDir: /tmp/RtmppdkqSw/file1b2d505e7df629
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on HubPub ─────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (12%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
! WARNING: Evaluate more vignette chunks.
ℹ 10 out of 17 code chunks = 58% unevaluated
ℹ 
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/CreateAHubPackage.Rmd
* Checking package installation calls in R code...
* Checking for library/require of HubPub...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/publish_resource.R (line 49, column 5)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/publish_resource.R (line 42, column 17)
    • R/publish_resource.R (line 50, column 16)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 2
functions greater than 50 lines.
  The longest 5 functions are:
    • create_pkg() (R/create_pkg.R): 80 lines
    • add_resource() (R/add_resource.R): 68 lines
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 57 lines (4%) are > 80 characters long.
  First few lines:
    • R/publish_resource.R#L39 vars <- c("AWS_DEFAULT_OUTPUT", "AWS ...
    • ...
    • vignettes/HubPub.Rmd#L125 The final function in `HubPub` helps the ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 137 lines (9%) are
not.
  First few lines:
    • vignettes/CreateAHubPackage.Rmd#L107 This file contains the metadata in
    the ...
    • ...
    • vignettes/CreateAHubPackage.Rmd#L729 ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 1 WARNINGS | ℹ 10 NOTES
ℹ See the HubPub.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.