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This page was generated on 2026-05-08 14:45 -0400 (Fri, 08 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 (2026-04-24) -- "Because it was There" 916
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Package 114/229HostnameOS / ArchINSTALLBUILDCHECKBIOCCHECK
GSVA 2.7.1  (landing page)
Robert Castelo
Snapshot Date: 2026-05-08 12:00 -0400 (Fri, 08 May 2026)
git_url: https://git.bioconductor.org/packages/GSVA
git_branch: devel
git_last_commit: 96ced1f
git_last_commit_date: 2026-05-05 06:35:09 -0400 (Tue, 05 May 2026)
teran2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skippedskipped

BUILD results for GSVA on teran2

To the developers/maintainers of the GSVA package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GSVA
Version: 2.7.1
Command: /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSVA
StartedAt: 2026-05-08 12:30:23 -0400 (Fri, 08 May 2026)
EndedAt: 2026-05-08 12:33:08 -0400 (Fri, 08 May 2026)
EllapsedTime: 164.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSVA
###
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* checking for file ‘GSVA/DESCRIPTION’ ... OK
* preparing ‘GSVA’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘GSVA.Rmd’ using rmarkdown
--- finished re-building ‘GSVA.Rmd’

--- re-building ‘GSVA_proteomics.Rmd’ using rmarkdown
--- finished re-building ‘GSVA_proteomics.Rmd’

--- re-building ‘GSVA_scRNAseq.Rmd’ using rmarkdown

Quitting from GSVA_scRNAseq.Rmd:104-109 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'scrapper'
---
Backtrace:
    ▆
 1. └─base::library(scrapper)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GSVA_scRNAseq.Rmd' failed with diagnostics:
there is no package called 'scrapper'
--- failed re-building ‘GSVA_scRNAseq.Rmd’

SUMMARY: processing the following file failed:
  ‘GSVA_scRNAseq.Rmd’

Error: Vignette re-building failed.
Execution halted