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This page was generated on 2025-12-09 13:17 -0500 (Tue, 09 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 925
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Package 104/230HostnameOS / ArchINSTALLBUILDCHECK
GEOquery 2.79.0  (landing page)
Sean Davis
Snapshot Date: 2025-12-09 12:00 -0500 (Tue, 09 Dec 2025)
git_url: https://git.bioconductor.org/packages/GEOquery
git_branch: devel
git_last_commit: ccaa9cd
git_last_commit_date: 2025-11-24 17:27:25 -0500 (Mon, 24 Nov 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for GEOquery on teran2

To the developers/maintainers of the GEOquery package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GEOquery
Version: 2.79.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GEOquery
StartedAt: 2025-12-09 12:36:07 -0500 (Tue, 09 Dec 2025)
EndedAt: 2025-12-09 12:36:09 -0500 (Tue, 09 Dec 2025)
EllapsedTime: 2.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GEOquery
###
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* checking for file ‘GEOquery/DESCRIPTION’ ... OK
* preparing ‘GEOquery’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘GEOquery’ ...
** this is package ‘GEOquery’ version ‘2.79.0’
** using staged installation
** R
** inst
Warning in file.append(to[okay], from[okay]) :
  write error during file append
Warning in file.append(to[okay], from[okay]) :
  write error during file append
Warning in file.append(to[okay], from[okay]) :
  write error during file append
** byte-compile and prepare package for lazy loading
Fatal error: cannot create 'R_TempDir'
ERROR: lazy loading failed for package ‘GEOquery’
* removing ‘/tmp/Rtmp9GzIIG/Rinst20186b687737a/GEOquery’
      -----------------------------------
ERROR: package installation failed