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### Running command:
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###   /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('ChemmineOB_1.51.0.tar.gz','quit-with-status'=TRUE)"
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── Installing ChemmineOB ───────────────────────────────────────────────────────
✔ Package installed successfully
── ChemmineOB session metadata ─────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpVmAY01/file1aa6a81d2e0dc8/ChemmineOB
→ BiocVersion: 3.24
→ Package: ChemmineOB
→ PackageVersion: 1.51.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/meat/ChemmineOB.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpVmAY01/file1aa6a81d2e0dc8/ChemmineOB
→ installDir: /tmp/RtmpVmAY01/file1aa6a81355d8ef
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on ChemmineOB ─────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 2.15.1 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: 'Date:' field format is not 'YYYY-MM-DD': 2026-3-12
ℹ NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (33%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
✖ ERROR: 'VignetteBuilder' listed in DESCRIPTION but not found as
'VignetteEngine' in any vignettes:
  • knitr
! WARNING: Vignette(s) missing Vignette metadata. See
https://r-pkgs.org/vignettes.html
  Update the following files:
    • ChemmineOB.Rmd
✖ ERROR: 'VignetteEngine' specified but not in the DESCRIPTION.
  Add 'VignetteEngine' to DESCRIPTION from the following:
    • vignettes/ChemmineOB.Rmd
! WARNING: Package listed as VignetteEngine or VignetteBuilder but not
currently Suggested.
  Add the following to Suggests in DESCRIPTION:
    • %knitr
! WARNING: Vignette(s) missing '\%VignetteIndexEntry{Vignette Title}'.
  Update the following files:
    • ChemmineOB.Rmd
! WARNING: Evaluate more vignette chunks.
ℹ 8 out of 11 code chunks = 72% unevaluated
ℹ 
* Checking package installation calls in R code...
* Checking for library/require of ChemmineOB...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/ChemmineOB.R (line 438, column 1)
    • ...
    • R/ChemmineOB.R (line 17077, column 108)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • ChemmineOB.R (line 443, column 8)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • print() in R/wrappers.R (line 149, column 27)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/ChemmineOB.R (line 65, column 19)
    • ...
    • R/wrappers.R (line 207, column 30)
ℹ NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
  Found in files:
    • R/ChemmineOB.R (line 9869, column 10)
    • R/ChemmineOB.R (line 10014, column 10)
    • R/ChemmineOB.R (line 15861, column 10)
! WARNING: Avoid T/F variables; If logical, use TRUE/FALSE
  Found 5 times:
    • T in R/ChemmineOB.R (line 4249, column 71)
    • ...
    • T in R/ChemmineOB.R (line 23509, column 78)
* Checking parsed R code in R directory, examples, vignettes...
! WARNING: Avoid 'Sys.setenv' (found 1 times)
  • Sys.setenv() in R/wrappers.R (line 17, column 10)
ℹ NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 2 times)
  • suppressWarnings() in R/ChemmineOB.R (line 451, column 18)
  • suppressMessages() in R/ChemmineOB.R (line 451, column 1)
* Checking function lengths...