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This page was generated on 2026-03-06 11:35 -0500 (Fri, 06 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4891
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4593
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2340/2357HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
xcms 4.9.2  (landing page)
Steffen Neumann
Snapshot Date: 2026-03-05 13:40 -0500 (Thu, 05 Mar 2026)
git_url: https://git.bioconductor.org/packages/xcms
git_branch: devel
git_last_commit: 1c6ac38
git_last_commit_date: 2026-02-19 07:45:20 -0500 (Thu, 19 Feb 2026)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped
See other builds for xcms in R Universe.

BUILD results for xcms on kjohnson3

To the developers/maintainers of the xcms package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/xcms.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: xcms
Version: 4.9.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data xcms
StartedAt: 2026-03-05 18:06:50 -0500 (Thu, 05 Mar 2026)
EndedAt: 2026-03-05 18:08:00 -0500 (Thu, 05 Mar 2026)
EllapsedTime: 69.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data xcms
###
##############################################################################
##############################################################################


* checking for file ‘xcms/DESCRIPTION’ ... OK
* preparing ‘xcms’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘LC-MS-feature-grouping.Rmd’ using rmarkdown

Quitting from LC-MS-feature-grouping.Rmd:69-76 [load-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'faahKO'
---
Backtrace:
    ▆
 1. └─base::library(faahKO)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'LC-MS-feature-grouping.Rmd' failed with diagnostics:
there is no package called 'faahKO'
--- failed re-building ‘LC-MS-feature-grouping.Rmd’

--- re-building ‘xcms-direct-injection.Rmd’ using rmarkdown
2026-03-05 18:07:44.402 R[66835:100865769] XType: Using static font registry.
--- finished re-building ‘xcms-direct-injection.Rmd’

--- re-building ‘xcms-lcms-ms.Rmd’ using rmarkdown
--- finished re-building ‘xcms-lcms-ms.Rmd’

--- re-building ‘xcms.Rmd’ using rmarkdown

Quitting from xcms.Rmd:29-37 [init]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'faahKO'
---
Backtrace:
    ▆
 1. └─base::library(faahKO)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'xcms.Rmd' failed with diagnostics:
there is no package called 'faahKO'
--- failed re-building ‘xcms.Rmd’

SUMMARY: processing the following files failed:
  ‘LC-MS-feature-grouping.Rmd’ ‘xcms.Rmd’

Error: Vignette re-building failed.
Execution halted