| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-26 11:34 -0400 (Thu, 26 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4876 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4574 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2325/2372 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| velociraptor 1.21.0 (landing page) Kevin Rue-Albrecht
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for velociraptor in R Universe. | ||||||||||||||
|
To the developers/maintainers of the velociraptor package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/velociraptor.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: velociraptor |
| Version: 1.21.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor |
| StartedAt: 2026-03-25 20:49:53 -0400 (Wed, 25 Mar 2026) |
| EndedAt: 2026-03-25 20:50:55 -0400 (Wed, 25 Mar 2026) |
| EllapsedTime: 62.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor
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* checking for file ‘velociraptor/DESCRIPTION’ ... OK
* preparing ‘velociraptor’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘velociraptor.Rmd’ using rmarkdown
Quitting from velociraptor.Rmd:110-118 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `py_call_impl()`:
! ValueError: Only CSR and CSC matrices are supported.
Run `reticulate::py_last_error()` for details.
---
Backtrace:
▆
1. ├─velociraptor::embedVelocity(reducedDim(sce, "TSNE"), velo.out)
2. └─velociraptor::embedVelocity(reducedDim(sce, "TSNE"), velo.out)
3. └─basilisk::basiliskRun(...)
4. └─velociraptor (local) fun(...)
5. └─zellkonverter::SCE2AnnData(vobj)
6. ├─base::do.call(anndata$AnnData, adata_list)
7. └─reticulate (local) `<anndata.utils.DeprecationMixinMeta>`(...)
8. └─reticulate:::py_call_impl(callable, call_args$unnamed, call_args$named)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'velociraptor.Rmd' failed with diagnostics:
ValueError: Only CSR and CSC matrices are supported.
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘velociraptor.Rmd’
SUMMARY: processing the following file failed:
‘velociraptor.Rmd’
Error: Vignette re-building failed.
Execution halted