| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-03-12 11:34 -0400 (Thu, 12 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4806 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4049 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2208/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| tidybulk 2.1.0 (landing page) Stefano Mangiola
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for tidybulk in R Universe. | ||||||||||||||
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To the developers/maintainers of the tidybulk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidybulk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: tidybulk |
| Version: 2.1.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data tidybulk |
| StartedAt: 2026-03-11 17:19:04 -0400 (Wed, 11 Mar 2026) |
| EndedAt: 2026-03-11 17:23:50 -0400 (Wed, 11 Mar 2026) |
| EllapsedTime: 286.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data tidybulk ### ############################################################################## ############################################################################## * checking for file ‘tidybulk/DESCRIPTION’ ... OK * preparing ‘tidybulk’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to process help pages) * creating vignettes ... ERROR --- re-building ‘comparison_coding.Rmd’ using rmarkdown Loading required namespace: AnnotationDbi 2026-03-11 17:19:30.754 R[97256:129970566] XType: Using static font registry. Quitting from comparison_coding.Rmd:507-512 [adjust] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `check_and_install_packages()`: ! The package "sva" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'comparison_coding.Rmd' failed with diagnostics: The package "sva" is required. --- failed re-building ‘comparison_coding.Rmd’ --- re-building ‘introduction.Rmd’ using rmarkdown Loading required namespace: AnnotationDbi Quitting from introduction.Rmd:903-927 [batch-correction-adjust-abundance] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `check_and_install_packages()`: ! The package "sva" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'introduction.Rmd' failed with diagnostics: The package "sva" is required. --- failed re-building ‘introduction.Rmd’ SUMMARY: processing the following files failed: ‘comparison_coding.Rmd’ ‘introduction.Rmd’ Error: Vignette re-building failed. Execution halted