Andrew J. Bass
| Snapshot Date: 2026-03-09 13:40 -0400 (Mon, 09 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/subSeq |
| git_branch: devel |
| git_last_commit: 133fac9 |
| git_last_commit_date: 2025-10-29 10:28:35 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-10 11:33 -0400 (Tue, 10 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4522 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 2847 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2149/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| subSeq 1.41.0 (landing page) Andrew J. Bass
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for subSeq in R Universe. | ||||||||||||||
|
To the developers/maintainers of the subSeq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/subSeq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: subSeq |
| Version: 1.41.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data subSeq |
| StartedAt: 2026-03-09 15:46:10 -0400 (Mon, 09 Mar 2026) |
| EndedAt: 2026-03-09 15:46:14 -0400 (Mon, 09 Mar 2026) |
| EllapsedTime: 4.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data subSeq
###
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* checking for file ‘subSeq/DESCRIPTION’ ... OK
* preparing ‘subSeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘subSeq.Rnw’ using knitr
Quitting from subSeq.Rnw:84-86 [subSeq_example]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'edgeR'
---
Backtrace:
x
1. +-subSeq::subsample(...)
2. | \-params %>% group_by(method, proportion, replication) %>% ...
3. +-dplyr::do(., perform.subsampling(.$method, .$proportion, .$replication))
4. +-dplyr:::do.grouped_df(...)
5. | \-rlang::eval_tidy(args[[j]], mask)
6. +-subSeq (local) perform.subsampling(.$method, .$proportion, .$replication)
7. | \-subSeq (local) handler(subcounts, ...)
8. \-base::loadNamespace(x)
9. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
10. \-base (local) withOneRestart(expr, restarts[[1L]])
11. \-base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'subSeq.Rnw' failed with diagnostics:
there is no package called 'edgeR'
--- failed re-building ‘subSeq.Rnw’
SUMMARY: processing the following file failed:
‘subSeq.Rnw’
Error: Vignette re-building failed.
Execution halted