Xiaofeng Wu
| Snapshot Date: 2026-04-15 13:40 -0400 (Wed, 15 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/scQTLtools |
| git_branch: devel |
| git_last_commit: f0e6db8 |
| git_last_commit_date: 2026-02-02 08:50:19 -0400 (Mon, 02 Feb 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-16 11:36 -0400 (Thu, 16 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4928 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4659 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1973/2394 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scQTLtools 1.3.5 (landing page) Xiaofeng Wu
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for scQTLtools in R Universe. | ||||||||||||||
|
To the developers/maintainers of the scQTLtools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scQTLtools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: scQTLtools |
| Version: 1.3.5 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scQTLtools |
| StartedAt: 2026-04-15 17:48:29 -0400 (Wed, 15 Apr 2026) |
| EndedAt: 2026-04-15 17:49:12 -0400 (Wed, 15 Apr 2026) |
| EllapsedTime: 42.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scQTLtools
###
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* checking for file ‘scQTLtools/DESCRIPTION’ ... OK
* preparing ‘scQTLtools’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘scQTLtools.Rmd’ using rmarkdown
Quitting from scQTLtools.Rmd:356-368 [callQTL3_matrix]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.chooseEnsemblMirror()`:
! Unable to query any Ensembl site
---
Backtrace:
▆
1. └─scQTLtools::callQTL(...)
2. └─scQTLtools:::match_gene_snp(...)
3. └─scQTLtools::createGeneLoc(geneList, gene_mart, geneDataset, OrgDb)
4. └─biomaRt::useEnsembl(biomart = "genes", dataset = geneDataset)
5. └─biomaRt:::.chooseEnsemblMirror(mirror = mirror, http_config = http_config)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'scQTLtools.Rmd' failed with diagnostics:
Unable to query any Ensembl site
--- failed re-building ‘scQTLtools.Rmd’
SUMMARY: processing the following file failed:
‘scQTLtools.Rmd’
Error: Vignette re-building failed.
Execution halted