##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL scGraphVerse
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘scGraphVerse’ ...
** this is package ‘scGraphVerse’ version ‘0.99.19’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c init.c -o init.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c regTree.c -o regTree.o
regTree.c: In function ‘findBestSplit’:
regTree.c:232:15: warning: variable ‘lc’ set but not used [-Wunused-but-set-variable]
  232 |     int last, lc, nl, nr, npopl, npopr;
      |               ^~
regTree.c: In function ‘predictRegTree’:
regTree.c:418:19: warning: unused variable ‘cbestsplit’ [-Wunused-variable]
  418 |     int i, k, m, *cbestsplit, s;
      |                   ^~~~~~~~~~
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c regrf.c -o regrf.o
regrf.c: In function ‘regRF’:
regrf.c:71:30: warning: unused variable ‘nodexts’ [-Wunused-variable]
   71 |     int *in, *nind, *nodex, *nodexts;
      |                              ^~~~~~~
regrf.c:71:22: warning: variable ‘nodex’ set but not used [-Wunused-but-set-variable]
   71 |     int *in, *nind, *nodex, *nodexts;
      |                      ^~~~~
regrf.c:69:10: warning: variable ‘oobpair’ set but not used [-Wunused-but-set-variable]
   69 |     int *oobpair, varImp, localImp, *varUsed, kk;
      |          ^~~~~~~
regrf.c:67:61: warning: variable ‘nPerm’ set but not used [-Wunused-but-set-variable]
   67 |     int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
      |                                                             ^~~~~
regrf.c:67:31: warning: unused variable ‘jout’ [-Wunused-variable]
   67 |     int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
      |                               ^~~~
regrf.c:67:22: warning: unused variable ‘nOOB’ [-Wunused-variable]
   67 |     int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
      |                      ^~~~
regrf.c:67:15: warning: unused variable ‘mr’ [-Wunused-variable]
   67 |     int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
      |               ^~
regrf.c:65:36: warning: unused variable ‘ytree’ [-Wunused-variable]
   65 |     double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww;
      |                                    ^~~~~
regrf.c:65:30: warning: variable ‘ytr’ set but not used [-Wunused-but-set-variable]
   65 |     double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww;
      |                              ^~~
regrf.c:65:18: warning: variable ‘xtmp’ set but not used [-Wunused-but-set-variable]
   65 |     double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww;
      |                  ^~~~
regrf.c:63:58: warning: variable ‘resOOB’ set but not used [-Wunused-but-set-variable]
   63 |           *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
      |                                                          ^~~~~~
regrf.c:63:50: warning: unused variable ‘delta’ [-Wunused-variable]
   63 |           *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
      |                                                  ^~~~~
regrf.c:63:38: warning: unused variable ‘ooberrperm’ [-Wunused-variable]
   63 |           *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
      |                                      ^~~~~~~~~~
regrf.c:63:30: warning: variable ‘ooberr’ set but not used [-Wunused-but-set-variable]
   63 |           *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
      |                              ^~~~~~
regrf.c:63:18: warning: unused variable ‘resid’ [-Wunused-variable]
   63 |           *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
      |                  ^~~~~
regrf.c:63:12: warning: variable ‘errb’ set but not used [-Wunused-but-set-variable]
   63 |           *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
      |            ^~~~
regrf.c:62:53: warning: unused variable ‘r’ [-Wunused-variable]
   62 |     double errts = 0.0, averrb,  *meanYts, *varYts, r, *xrand,
      |                                                     ^
regrf.c:62:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable]
   62 |     double errts = 0.0, averrb,  *meanYts, *varYts, r, *xrand,
      |                         ^~~~~~
regrf.c:62:12: warning: unused variable ‘errts’ [-Wunused-variable]
   62 |     double errts = 0.0, averrb,  *meanYts, *varYts, r, *xrand,
      |            ^~~~~
gcc -std=gnu2x -shared -L/home/biocbuild/bbs-3.22-bioc/R/lib -L/usr/local/lib -o scGraphVerse.so init.o regTree.o regrf.o -L/home/biocbuild/bbs-3.22-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.22-bioc/R/site-library/00LOCK-scGraphVerse/00new/scGraphVerse/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scGraphVerse)